Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1318 ATGTTTGGGAGGGCACCGAAGAAGAGCGATAATACGAGGTACTACGAAATCCTCGGCGTCTCGAAGAACGCTTCGCAGGATGATCTGAAGAAGGCTTACAAGAAAGCCGCCATCAAGAATCACCCTGACAAGGGCGGTGATCCCGAGAAGTTTAAAGAGCTGGCACAAGCATATGAGGTTCTGAGTGACCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCGCTTAAGGAAGGAATGGGTGGTGGCGGTGGCCATGATCCGTTTGATATCTTTTCATCTTTCTTTGGAGGTGGAAGTAGTCGAGGTAGGAGGCAGAGGCGCGGAGAAGATGTGGTTCACCCTCTCAAGGTCTCTCTGGAGGACCTTTATCTCGGGACTTCTAAGAAGCTCTCCCTCTCCAGAAATGTCATATGCTCCAAGTGCACTGGTAAGGGTTCTAAGTCTGGTGCTTCGATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACATCTTGGCCCGTCCATGATTCAGCAGATGCAGCATGCTTGCAATGAATGCAAGGGTACTGGAGAAACCATCAACGACAGAGATCGCTGCCCACAGTGCAAGGGAGAAAAGGTTGTGCAGGAGAAAAAAGTCCTTGAAGTTATTGTGGAAAAGGGAATGCAGAACGGGCAGAAGATTACATTCCCTGGCGAAGCTGATGAAGCGCCAGACACAATTACTGGGGATATTGTCTTTGTCCTTCAGCAGAAGGAACATCCCAAATTCAAAAGAAAGGCTGAAGATCTTTTTGTAGAGCACATTTTGTCCCTTACTGAAGCCTTATGTGGCTTCCAATTTGTGCTGACTCACTTGGATGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTCCCTAAACCCTGACCAGGTTAAGGCCTTGGAAGCTGTTCTGCCACCAAAGCCTTCTTCACAATTGACAGACATGGAGCTGGATGAATGTGAGGAAACAACACTCCATGATGTCAACATGGAGGAGGAGACTAGGAGGAAGCAACAACAAGCTCAGGAGGCATATGATGAGGATGATGACATGCCTGGTGGTGCACAGAGGGTACAGTGTGCCCAGCAGTAA 1233 0.4761 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCTGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHILSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRSFMKGKLYIHFTVEFPDSLNPDQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQAQEAYDEDDDMPGGAQRVQCAQQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1318 410 Pfam DnaJ C terminal domain 115 336 IPR002939 -
Gso11g1318 410 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gso11g1318 410 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 410 - -
Gso11g1318 410 ProSiteProfiles Zinc finger CR-type profile. 128 212 IPR001305 GO:0031072|GO:0051082
Gso11g1318 410 SMART dnaj_3 12 66 IPR001623 -
Gso11g1318 410 SUPERFAMILY HSP40/DnaJ peptide-binding domain 107 262 IPR008971 GO:0006457|GO:0051082
Gso11g1318 410 CDD DnaJ 14 63 IPR001623 -
Gso11g1318 410 CDD DnaJ_zf 141 207 IPR001305 GO:0031072|GO:0051082
Gso11g1318 410 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Gso11g1318 410 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gso11g1318 410 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gso11g1318 410 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gso11g1318 410 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 138 210 IPR036410 -
Gso11g1318 410 Pfam DnaJ domain 14 71 IPR001623 -
Gso11g1318 410 CDD DnaJ_C 112 339 - -
Gso11g1318 410 Gene3D - 255 337 - -
Gso11g1318 410 SUPERFAMILY Chaperone J-domain 8 103 IPR036869 -
Gso11g1318 410 Pfam DnaJ central domain 141 207 IPR001305 GO:0031072|GO:0051082
Gso11g1318 410 SUPERFAMILY HSP40/DnaJ peptide-binding domain 258 347 IPR008971 GO:0006457|GO:0051082
Gso11g1318 410 Gene3D - 141 207 - -
Gso11g1318 410 Gene3D - 106 253 - -
Gso11g1318 410 MobiDBLite consensus disorder prediction 364 410 - -
Gso11g1318 410 MobiDBLite consensus disorder prediction 369 391 - -
Gso11g1318 410 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 410 IPR044713 GO:0006457|GO:0030544
Gso11g1318 410 Gene3D DnaJ domain 10 105 IPR036869 -
Gso11g1318 410 Hamap Chaperone protein DnaJ [dnaJ]. 10 362 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1318 Gso-Chr11 14525023 14527783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1318 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.04e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1318 K09503 - gmx:100808604 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1318 11 14525023 14527783 Gso11g1318 11 14525023 14527783 ECH
Gso12g0780 12 8074948 8077746 Gso11g1318 11 14525023 14527783 GST
Gso12g1602 12 39559566 39561841 Gso11g1318 11 14525023 14527783 PCT
Gso11g3251 11 48308427 48310683 Gso11g1318 11 14525023 14527783 PCT
Gso11g1318 11 14525023 14527783 Gso12g1602 12 39559566 39561841 PCT
Gso11g1318 11 14525023 14527783 Gso11g3251 11 48308427 48310683 PCT