Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1314 ATGGCATCTTCGAACCCACCATGTGCGGCTTGCAAGTTCCTGCGGAGAAAGTGCCAACCCGAATGCGTGTTCGCGCCATACTTCCCACCGGACCAGCCTCAGAGGTTCGTCAACGTGCACAGAATCTTCGGAGCCAGCAATGTCTCGAAACTTCTCAATGAGTTGCACCCTCACCAGCGCGAAGACGCAGTGAATTCTCTAGCCTACGAAGCCGAAATGCGCCTCCGAGACCCTGTTAATGGGTGTGTTGGAATCATCTCTCTTCTTCACCAGCAGCTTCGCCAGCTCCACATGGACCTCCAGAGTGCCAAATTTGAGCTCTCAAGGATCCATAACTTGGGTGTAACCATACCCACTGGATACGGTCACACTTCTGCTGCGGTTATCACGCCCGTTAGCGCCTCTCATGTTATGAATGGTGCTGATGGTAGCTATGATAACCGCTATTATAACCAACAACATAGTTATCATCAGTGTGTGCCTCAGCAGTTAGTTAGGAACTTTGTTGGTGCAGGGAACAACTGTGATGAGGGTAATGTGTTGGCCATAAACATTGCTAGTTTTGGGCCATTGAGTCAGCTCCAGCAGCCTAGTGCTGCTGCTGTTGCTCGTGATGACCCTCACACTAGGGTTCATCACTCTTAG 645 0.5085 MASSNPPCAACKFLRRKCQPECVFAPYFPPDQPQRFVNVHRIFGASNVSKLLNELHPHQREDAVNSLAYEAEMRLRDPVNGCVGIISLLHQQLRQLHMDLQSAKFELSRIHNLGVTIPTGYGHTSAAVITPVSASHVMNGADGSYDNRYYNQQHSYHQCVPQQLVRNFVGAGNNCDEGNVLAINIASFGPLSQLQQPSAAAVARDDPHTRVHHS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1314 214 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Gso11g1314 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 147 - -
Gso11g1314 214 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Gso11g1314 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1314 Gso-Chr11 14474965 14475685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1314 2 201 AS2 family AT1G65620 58.416 9.25e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso11g1314 LOB 3.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1314 - - gmx:100801155 446.047