Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1313 ATGGAATTCCTTTACGGGTTTGCATCCTCTATTTCAAGAGACTTGGTATGTGGAGCAGTAAATCAATTACGTTATCCTTGTTGCTTTAACAATTTTGTTGAAGAGCTTGAAAAAGAAGAAGGCTATTTGATTGCAACAATATATAGTGTCCAAAACCGTTTTGAACTCGCCAAGAAACAAACGAGAAAGGTTGCTGAAGTTGGTGATAAGTGGCTAAAGGATGCTAACATTGACGCAAACAAAGTGAATCAGTTGCTAAAAGAGGCCAGAACAAAAAAGAGTTCCTGTTTTGGGCACTGTCCAAATTGGATTTGGCGATATCAATTAGGAAAGAAGTTAGCAAATAGAAAAAGGAAACTTGAAAAGTGCATTGAAGAAGGTAGACAATATGTTGAAATTGAAAGCATTGCTACACTTCCTTTTGGCACACATGATTTTCTTTCAGAAAAAAGTTTGACTTTTGAGAGTAGACAGCCTGCTTATGAGCAACTAATGGAAGCACTGAAAGATGATGAGGTCGCCGTGATTGGATTGTATGGGATGGGGGGTTGTGGTAAAACCACATTAGCAATGGAAGTTAGGAAGAAAGTAGAAGCAGAACGTCTTTTTGATGAAGTGCTTTTTGTGCCTGTGTCTAGTACAGTACAAGTTCAAAGGATTCAAGAAAAGATTGCAAGTTCAATGCAGTATATATTTCCAGAAAACGAAGAAATGGAGAGAGCTCAACGCTTGTACATGAGACTAACTCAAGATAATAGGATTCTTGTGATTTTGGATGATGTGTGGGAGAAGCTTGATTTTGGTGCCATAGGGATTCCTTCCACTGAACATCATAAGGGTTGCAAGATTCTCATTACCACTCGATCAGAAGAAGTTTGTACTATGATGGACTGCCATAAAAAGATTCACCTGCCAATCTTAACAGATGGAGAAGCATGGAATCTTTTCCAAAAGAAAGCCCTTGTATCCGAAGGCGCATCTGATACCTTAAAGCATTTGGCAAGAGAGATTTCAGATAAGTGCAAAGGATTGCCTGTTGCCATTGCAGCTGTTGCTAGTAGCTTGAAGGGCAAAGCTGAGGAGGTGTGGAGTGTTACATTGATGAGATTCACAAGTTCGAAACCAGTGAATATTGGAAAGGGTTTGCAGAATCCTTACACGTGCCTACAGTTAAGCTATGATAATTTGGATTCTGAAGAAGCCAAATCACTTTTCCTGTTGTGTTCTGTATTCCCAGAGGATTCTCACATTCCAATAGAACTTCTAACAAGATTTGCAATTGGGTTGGGTTTTGTTGGAGAAGTTTGCTCATATGAAGAGGCCAGAAATGAAGTGATTGTAGCCAAAATTAAGCTCACGAGTTCTTGTTTATTGTTGTGTGTGGATGATAAAAGGGTCAAAATGCACGACTTAGTTCGCTATGTAGCCCGCAGGATAGCAAAGAATGAGAATAAGATGATTGAGTGTGCATTGGAAAAGGATGCGACTTTGGAGCATAATTCAGTGAGATATTTGTGCAGTAAAAAAATTCCAGATGAACTAGACTGTTCCAATCTTGAGTTTCTGTATTTATATACAAATTTGGATGTATCAGATGGAATTTTCAAAGGCATGAGAATGCTTAGAGTTTTGTTTCTTTGCAATAAGGATAGGTACAGAAGGCCATTGTTGTCAATGTCATTAAAATCATCAACAAATCTTCGTTGTGTACTCCTACGCAACTGGGAATTAGGCGACATCTCATTTTTGGGCGATGTTAAGAAACTTGAAAGTCTTACATTACATAATTGTTCATTCCTTGAATTACCAGATGTTGTTGCTACACAATTGACAAGCTTGAGATTGTTGGATTTGTCAGAATGTGACATGAAACATAGTCCTTTTGAAGTGATTGGAAGACTCCCACAATTAGAAGAGCTGTACTTTGCTGATCATAGATCAAAATGGGATTTCTACAATGAACATGCTGCTGAATTCTTCCAAGAGTTTAGAGTTCCCCAAGCATTGCAAAGGTATCACATACAATTAGGAAACATGTTTGCTGGTTTTCAAGAGGAGTTTCTTAATCATCACAGAACCTTATTTCTTAGTTATTTGGATCTATCTAATGCAGCATTTAAGGATTTGGCCAAAAAGGCAGAGGTTTTGTGTCTAGCAAATATTGAGGGAGGTGCAAAAAATATTCTCCCCGACATATTTCAAATAGAAGGAGGTATGAGTCATTTGATTGAGCTTTTGATACGTGACTCTGAGAAGATAGAGTGTTTGATTGACACTAGTCATCATTTGAGCGAGGTAGGAGCTATCTTCTCCAACTTGCATTGCCTAAGAATTGAGCGCATGAAGCATATGGGAGCCTTATACCATGGTTCTCTACCTCCTAGGTGCCATTTTGAGAAATTAAAGGACTTGTACTTAAGTCATTGTCCAAAGCTGATATGCCTTTTCACTCTTGAGGTTGCTCAAAATCTGGTACAGTTGGAAAAATTAGAAATAATATCCTGTCCTGGACTGAAGCATATAGTGACTGATGATGACAAAGAGGAGATAAGTACAAATGATAAAAGGTTGTTGTTCCGAAAATTAAAACGGCTCCATGTCAGAGAGTGCGACAAGTTAAAATATTTGATCCCAATCACTTTTGCTCATGGCCTTGTACAATTAGAGAATTTGGAAATTGTATCTAATAGTGAGTTGAAATACCTGTTTGGCCATTGCACAAAAGGAGATCATCTGGCTGGTCAGAATCAAAATGAACTTAAGATTGAGCTTACTGCCTTAGAAGAGCTTACTCTTATCATGTTGCCAGAGATCATCAGCATTTGTCCTGAAGTTTGTTATCCAACATGGCCATTGCTTCGTCAGTTTACATTGCAGAATTGTCCAGGATTCTCCATTGTGTCTATCAATACTTGCTTGGCTTTTCATAACAATGACATAATTAATGAAGCTTCATATCTAACAGTGCAAAATATAAAAGAAGTCCGGGTCAATAACTGTGAGTTAGAAGGTATCATTCAGCTGGCAGAACTATCCATTGATGGAAAACAAGATCCATTGATATCTTGTTTGGAAATGCTGTATTTAGAGAATCTGCCTCAATTGAGGTATATATGTAAAGGAGATAAAAAATCCTTGAACCTCCTCCAAAATCTTCAACAAATGGAGGTAAGTGGATGCAGAAAATTAAAGTCCATCTTTTCAGCATGTATCTCTGGAGGCCTACCTCAACTGAAAGAGCTGAAAATTGAAAATTGCAGTCAGCTACAACAAATCATTGAGGATAAGGAGCCTCAAAACCCAGGATCATTCAATCTTCCCAACCTTACTAGGCTAACGCTAAAATCTTGTCCAATTTTGGGTTCATTGTTCTCAGCATCCACAGCTGAAACCTTGACTTCATTGGAAGAATTGACAATAGAAGATTGCCATGGTTTGAAGCATATACAAATTTATGGAAGAGCTCATACAAATAAAAAAGAAGTGATTCAAGATGATCATGACTTTCAGAGTTATGTGCCATTTTTTCCAAGTTTGAAAAAGTTGAGTATTATGAGATGCCACTTACTGGAGTATGTATTCTCCATCTCATTTGCCAGAGGCATGAGGCAATTGGAAATTATAGAAATCAGAGAGGCTCCTGAGTTGAGACATGTATTTGGTCAGAACATTCATTCTTCCCAGCAATACCAAAGCAAGTTTCAAATTGAGTTTCCTGTTTTGGAAAGAGTGACACTCCATAGTACACCAAATATGATTGGCATTTTCCCAGAAAATTATTCTGCAACATGCTCATCTTTGCAATTGCTTGTCATGAACAATATTGGGCTGTCCACTCTATCTATCAATAATTTGAAGGTTGATTTAGAAGCTACACATTCAGATCATAGTTCTAAAACGGATTCAAGGGTAATGAGTATGACAACTAAGCAAAAGTTAGCATCTGTTATTATTGAGAACTCGGAAATCAAAGAAATTTTCAATCTGGAGGAATTTCCTATCAATGGACAACAAATGACTTTGTGGATACAAGTCCTAGAGTTAGTTAATTTACCAAAGCTAAGGTATATATGGAAGAGTTCCAAACATTTTGTGTGCCTTCAAGTTCAACATCTTCATGAACTACACATTTGCAACTGTCCAAAACTAAAGGTTATCTTCTCTGTCTCTATCTTGAGAATGCTACCTCTGTTAAAGATCCTCATTGTAAAACATTGTGAGGAATTGGAGCAAATCATTGAGGATGATAAAGAAAATGGAAATGGATCAAATCCTCAATCCCCAAAAGTATGCTTCTCACATCTTAAACTCCTTCTTGTCTCACACTGCAACAACTTAAAGCATCTGTTCCTTATCTCCATTTACCACGAGTTTCCAGAACTAGAGCATCTGATCCTAAATCAAAATACTCGACTAGTGCAAGTGTTTCAAGGTGAAACAGGTGTGAGAGAAGGGAGGGTGGAGGTTTTGCTTCCGAAACTGAAACATGTTGTATTAATGCAACAGCCAAACCTCATAAATTTATGTGATGGGATTGAATTTCAGACTGTGATCAATCTTCTTGTGCACGATTGTCCAAAGTTCTCACTAACTTCAACAACTACTGTCGAGGACATGCTGCGGACCTCTAATTCTGATAAGGAAATTGATTTCTATCTCCGTCCTCAATTACTCAACATAAGTGGTATCACAACAAAAGGCTTTGATGTCCTTACCTCAAAGAAAGAAAACAAAGGGACAAAAGACTTGCAATCATGGGACCAGAGACTTCCACTTATTCCTATACCAAACTTGATGAAGAGTATTGAGGATGTAGTGAAAGATTGGATTCAGGAGGAGGCTCCATCAGAGGAAGTTAAGAAAGAAACTTTGTCCATTGGTGTAGAAGGTGCTGGCTTGGATGGTGTTGTTGTGGCTCACACCAAGCCTAGTGGTGCGGAGATGGTATCGGATTTCTGGGTGGTTGAACAAGGTGATAGGCCTAATCAACACAGGAGAGGAACTTCATCATGTCAGAGGATTCAGAATCTTGATGATAGCATCCAAGAAGAATCTAACTTGCTTGATAAAGAAGGTGAAGTAGGTGTTGTTTCTAAGAACAGCATTGTGGCTCAAAGAAATGAAAAACCAGAGATGGAAATTGCTTCAGAGAAACCAGCAATAGTAAATTCCTTAACTAACTTGGAACTGGTTGAAGGGGCATCTCTAAGTTATTTGGATATTCCTCTACATAAAACACACTCAAATGGGTTGGTGGATGGACAATCGATGAGTGAACCGTTTTTTATGAACCAACAAAAGCTACTTGGAGAAATAGCAAGTACCGTTGAAATTCCTCAGAGTGAAATTATGCCCAGCCAAACTGAAACATACACTGCTAAAGAAAGTGAAGGCCATACTATAAATATTCTAGACTTTGTAGCCAATGATCTCATGAGTTTATTTCAACCTGTGGAATATGATGGTGAAGGCCAAGTAACCGAAGATAACCAGGTTGTAAAGGTCCTTGCAGACCTTGAAAGGTGTCTAAAGATGCCACTGAAGGACATAGCTAGCTCTGAGACTGACAGCCTCCTTCTTTTAACTGCTCTTAACTTTTTGTCCAATCTTCCTTTAAAAGATGTAACTCTCTCAGATGGACTTAAAGATATTGTAGACTCTATGCACACACAGTTCCCAAGCATTCTATGTTCCTTCAAGCAAGCCTTTGCCACCACTGACAAGTTGGAAGCACATGAAGCTCACCAGAATGTGGTAGCTGTTACTCTTGCTTCCAAAATATCTGGGGCGAAGAATTTTATGGATGAAGGTCAACAGAAGGAAGCGGTTTTGAAGGAACGAATCACTAGGTTGAAGAAAGAAATAAAAGATTGTGAGGCTGACTTATCATCTCTTCAAGAGGAAAAGAAGAAATGCATTGCAGAAACTATACGGTACAAAGAGGAGTTTGAAAATGTGAGGAAAGACAAATCTCAAATGGTGGAAGATCAAAGAAAAGTTCGGCAAGAATTATTTGAGGTCGGTTATAAATGGTCAGCTCTGTGTAGCCGATTTGCACACAATCGCATTGTTTCTAGAAATCTCTCTTGA 6090 0.3831 MEFLYGFASSISRDLVCGAVNQLRYPCCFNNFVEELEKEEGYLIATIYSVQNRFELAKKQTRKVAEVGDKWLKDANIDANKVNQLLKEARTKKSSCFGHCPNWIWRYQLGKKLANRKRKLEKCIEEGRQYVEIESIATLPFGTHDFLSEKSLTFESRQPAYEQLMEALKDDEVAVIGLYGMGGCGKTTLAMEVRKKVEAERLFDEVLFVPVSSTVQVQRIQEKIASSMQYIFPENEEMERAQRLYMRLTQDNRILVILDDVWEKLDFGAIGIPSTEHHKGCKILITTRSEEVCTMMDCHKKIHLPILTDGEAWNLFQKKALVSEGASDTLKHLAREISDKCKGLPVAIAAVASSLKGKAEEVWSVTLMRFTSSKPVNIGKGLQNPYTCLQLSYDNLDSEEAKSLFLLCSVFPEDSHIPIELLTRFAIGLGFVGEVCSYEEARNEVIVAKIKLTSSCLLLCVDDKRVKMHDLVRYVARRIAKNENKMIECALEKDATLEHNSVRYLCSKKIPDELDCSNLEFLYLYTNLDVSDGIFKGMRMLRVLFLCNKDRYRRPLLSMSLKSSTNLRCVLLRNWELGDISFLGDVKKLESLTLHNCSFLELPDVVATQLTSLRLLDLSECDMKHSPFEVIGRLPQLEELYFADHRSKWDFYNEHAAEFFQEFRVPQALQRYHIQLGNMFAGFQEEFLNHHRTLFLSYLDLSNAAFKDLAKKAEVLCLANIEGGAKNILPDIFQIEGGMSHLIELLIRDSEKIECLIDTSHHLSEVGAIFSNLHCLRIERMKHMGALYHGSLPPRCHFEKLKDLYLSHCPKLICLFTLEVAQNLVQLEKLEIISCPGLKHIVTDDDKEEISTNDKRLLFRKLKRLHVRECDKLKYLIPITFAHGLVQLENLEIVSNSELKYLFGHCTKGDHLAGQNQNELKIELTALEELTLIMLPEIISICPEVCYPTWPLLRQFTLQNCPGFSIVSINTCLAFHNNDIINEASYLTVQNIKEVRVNNCELEGIIQLAELSIDGKQDPLISCLEMLYLENLPQLRYICKGDKKSLNLLQNLQQMEVSGCRKLKSIFSACISGGLPQLKELKIENCSQLQQIIEDKEPQNPGSFNLPNLTRLTLKSCPILGSLFSASTAETLTSLEELTIEDCHGLKHIQIYGRAHTNKKEVIQDDHDFQSYVPFFPSLKKLSIMRCHLLEYVFSISFARGMRQLEIIEIREAPELRHVFGQNIHSSQQYQSKFQIEFPVLERVTLHSTPNMIGIFPENYSATCSSLQLLVMNNIGLSTLSINNLKVDLEATHSDHSSKTDSRVMSMTTKQKLASVIIENSEIKEIFNLEEFPINGQQMTLWIQVLELVNLPKLRYIWKSSKHFVCLQVQHLHELHICNCPKLKVIFSVSILRMLPLLKILIVKHCEELEQIIEDDKENGNGSNPQSPKVCFSHLKLLLVSHCNNLKHLFLISIYHEFPELEHLILNQNTRLVQVFQGETGVREGRVEVLLPKLKHVVLMQQPNLINLCDGIEFQTVINLLVHDCPKFSLTSTTTVEDMLRTSNSDKEIDFYLRPQLLNISGITTKGFDVLTSKKENKGTKDLQSWDQRLPLIPIPNLMKSIEDVVKDWIQEEAPSEEVKKETLSIGVEGAGLDGVVVAHTKPSGAEMVSDFWVVEQGDRPNQHRRGTSSCQRIQNLDDSIQEESNLLDKEGEVGVVSKNSIVAQRNEKPEMEIASEKPAIVNSLTNLELVEGASLSYLDIPLHKTHSNGLVDGQSMSEPFFMNQQKLLGEIASTVEIPQSEIMPSQTETYTAKESEGHTINILDFVANDLMSLFQPVEYDGEGQVTEDNQVVKVLADLERCLKMPLKDIASSETDSLLLLTALNFLSNLPLKDVTLSDGLKDIVDSMHTQFPSILCSFKQAFATTDKLEAHEAHQNVVAVTLASKISGAKNFMDEGQQKEAVLKERITRLKKEIKDCEADLSSLQEEKKKCIAETIRYKEEFENVRKDKSQMVEDQRKVRQELFEVGYKWSALCSRFAHNRIVSRNLS* 2030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1313 2029 SUPERFAMILY RNI-like 1105 1359 - -
Gso11g1313 2029 Gene3D - 307 392 IPR042197 -
Gso11g1313 2029 Gene3D - 393 479 IPR036388 -
Gso11g1313 2029 Coils Coil 72 92 - -
Gso11g1313 2029 Gene3D Ribonuclease Inhibitor 1160 1500 IPR032675 -
Gso11g1313 2029 Coils Coil 1934 1982 - -
Gso11g1313 2029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 408 IPR027417 -
Gso11g1313 2029 PANTHER - 796 1097 - -
Gso11g1313 2029 PANTHER - 24 679 - -
Gso11g1313 2029 PANTHER - 1103 1421 - -
Gso11g1313 2029 Gene3D Ribonuclease Inhibitor 485 656 IPR032675 -
Gso11g1313 2029 PRINTS Disease resistance protein signature 175 190 - -
Gso11g1313 2029 PRINTS Disease resistance protein signature 248 262 - -
Gso11g1313 2029 PRINTS Disease resistance protein signature 341 355 - -
Gso11g1313 2029 PRINTS Disease resistance protein signature 608 624 - -
Gso11g1313 2029 SUPERFAMILY L domain-like 1239 1519 - -
Gso11g1313 2029 Pfam NB-ARC domain 161 395 IPR002182 GO:0043531
Gso11g1313 2029 PANTHER DISEASE RESISTANCE RPS5-LIKE PROTEIN 1103 1421 - -
Gso11g1313 2029 PANTHER DISEASE RESISTANCE RPS5-LIKE PROTEIN 796 1097 - -
Gso11g1313 2029 PANTHER DISEASE RESISTANCE RPS5-LIKE PROTEIN 24 679 - -
Gso11g1313 2029 Gene3D - 147 303 IPR027417 -
Gso11g1313 2029 Gene3D Ribonuclease Inhibitor 915 1159 IPR032675 -
Gso11g1313 2029 Gene3D Ribonuclease Inhibitor 669 912 IPR032675 -
Gso11g1313 2029 SUPERFAMILY L domain-like 467 1150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1313 Gso-Chr11 14455628 14465318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1313 172 637 WRKY Transcription Factor Family AT5G45050 23.540 1.94e-12 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1313 - - gmx:102667222 3973.32