Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1311 ATGGCTAGAAAGAAGCTTCGCCATACATACATAAACAACCCCCTAAAGAGGAAAACAACGTTCAAGAAAAGAAAAAATGGTTTTCTCAAGAAGGTTGATGAAATCACTACCCTTTCTGACATTCGAGCATGTGCTATCATTTATACTCTGGATGAACCTGAGCCTAAGGTTTGGCCATCTAACCAGGGACTAGAAAGTGTGATTTCCAGGTTTAGGGGAGTTTCTGAATTGGCACAAAGCAAGAGAATGTTGTGTCAAGAGAACCTTTTGAAAAGAAACATAATGAAAGCTCAGGGAAAATTGATGAATGAAATCAAGAAGAAGGAGATTGGCCTTTTCATGTGTCAATACTTTGCTAGTTGGAACAACCTTGACAATGCAAACATTATTGATCAGAATGATATCACATTGTTGGCTAATAAAAAATTGGAGATTACAAAGAAAAATGAAATTCTCCAAGTCCAAGAGGTGACACCAGCTATTGAAAATGGAGGAGAAACCATGACTGAAGGAGAGCAAACACTTGTGGCCAATGTGGATGCCATGCCAAATCTGAATTGGTCTAATGACAACATCGATGATGGTGATGGGGATGGGATCGATGTGAAGATTGGAAGATGTTAA 624 0.3878 MARKKLRHTYINNPLKRKTTFKKRKNGFLKKVDEITTLSDIRACAIIYTLDEPEPKVWPSNQGLESVISRFRGVSELAQSKRMLCQENLLKRNIMKAQGKLMNEIKKKEIGLFMCQYFASWNNLDNANIIDQNDITLLANKKLEITKKNEILQVQEVTPAIENGGETMTEGEQTLVANVDAMPNLNWSNDNIDDGDGDGIDVKIGRC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1311 207 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Gso11g1311 207 PANTHER MADS BOX PROTEIN 2 157 - -
Gso11g1311 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g1311 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g1311 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Gso11g1311 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g1311 207 Gene3D - 15 96 IPR036879 GO:0003677|GO:0046983
Gso11g1311 207 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Gso11g1311 207 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1311 Gso-Chr11 14329066 14329833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1311 1 185 Type I MADS-box Gene Family AT5G48670 38.542 2.40e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1311 SRF-TF 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1311 - - gmx:102667813 394.045