Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1306 ATGGGTATACTACGTCGGTTGAAGACCGTCGTTGTCTGCGACGACGACCGTCGTAGAAAGGTCCACAATTCAAACACGGCTGTCAACAGCCCCGTCGTAGAAGTAACAACAGACTACGACGGGCATGGGGACACCACCGTCGTAGAAGTAACAACAGACTACGACGGTTGTCTACCCAGAACCGTCGTAGAAGGGTCCTATCACTACAACGAGGTTGCTTGTTGGGTGTCCACCGAGGAGAGACAAGCAGCAAGAATAAGAGGCTTATACCTCAGAGCAATTTTAAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAATACTGGTGAGGTTGTTGGAAGGATGTCAGGTGACACACTTCTTATTCAAGAAGCCCTGGGAGAGAAGGTAAGAAAATTCATACAGTGTGTGGCATGTTTTTTAGGACGTTTAGTCATAGCATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTTCTATCTTGTATTCCACCTCTTGTAATCTTTGGTTCCATGATGAGCTTTACTTTTGCAATGTTGCCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTGTAGTAGAGCGCACAATTGATTCAATTCGACAAGTTGCATCATTTACAGGCGAGAGTCAAGCTACAGCTCAATACAATCAATCCTTAACCAAAGCTTACAGGACTGCAGTGCAAGATGGAGTGGTTGCTGGGAGGATAATAGACAGTGCTAAGATTCTTGCTTGGAGTTTTAGTGATTCAAATTTTTCAATTGGTGATGCATTAGTGACAGAAAATTTGCCTTCATTTGTTCATCATAAAAAGTGGTTTCCTGGAGCACAAGCTTTCGCGGTAGGTGTCACCAGTATTGTGTTTGTGTTAATCATTGGTTTTGGTTATGTAGCATTTTTCGTTCTCCGCAGAAGAAAGACACAAGAAGAAGTTGAAGATTGGGAACTGGAGTATTGGCCTCACAGGATAGGTTTCCATGAGATCGATGCAGCAACAAGGGGGTTTTCTGAAGAGAATGTGGCTGTTGTAGGAGGGACCGTGAAGGTATATAAAGGGGTTTTGCATGGGGTAGAAGTTGCAGTCAAGAGAATTCCTCAAGAAAGGGAAGAAGGGATGAGAGAGTTTTTGGCCGAGGTTTCAAGCCTTGGCAGAATGAAGCACAAAAATTTAGTAGGATTAAGAGGCTGGTGCAAAAAAGAAAAGGGAAATTTGATTCTAGTTTATGACTTCATGAGCAATGGAAGTTTAGACAAATGGATATTTGAGTGTGAAGAGGGAATGATGCTAACATGGGAAGAGAGGATTCAAGTTTTGAAAAATGTAGCCACAGGGATTCTATACCTGCATGAGGGTTGGGAAGTTAAGGTCTTGCATAGGGACATTAAAGCAAACAATGTTCTTCTTGATAAGGACATGAATGCAAGGCTGGGAGATTTCGGATTGGCTCGTATGCATGATCATCAGGGACAAGTGGTCAGCACAACAAGAGTAATAGGGACACTAGGATACATTGCTCCTGAAGTGATTCAAAGAGGAACAGCGTCAACTTTGTCTGATGTGTTTGGTTTTGGAATATTGGTGTTGGAAGTAATTTGCGGACGAAGACCTATTGAAGAACATAAGCCGGGGCTAATTGAATGGCTGATGTCCTTAATGGTGCAAGGCCAATTGCACAGTGCAATTGATGAAAGGTTGAAGGCTAAAGGGGGATACACCATAGAGGAAGGTGAGAGATTTCTTCATTTGGGTTTGTTGTGTTCACATACAGACCCTAGTATTAGACCAACAATGAGGCAGGTTGTGAAAATTTTGGAGGTGGAAATTGACAGCATTGAGTCTGATGAAGATAACATGGAAATGAGTTTGCTTGGAAAAATAAGATCAGCTACTACGTGGTCTAGAGCTGAATGTGCTTTACCATACAGTGGTTACCCTTCTTTTGATGAAGTTAAGATGTTCAGTTTTAATTCTAGGACTTCTAGAAGTGGCTCAAGTACCTTTCCAGGATCAGAATCAGAAATCACCAGTATTAATATGTAA 2046 0.4252 MGILRRLKTVVVCDDDRRRKVHNSNTAVNSPVVEVTTDYDGHGDTTVVEVTTDYDGCLPRTVVEGSYHYNEVACWVSTEERQAARIRGLYLRAILRQDISFFDKETNTGEVVGRMSGDTLLIQEALGEKVRKFIQCVACFLGRLVIAFIKGWLLTLVLLSCIPPLVIFGSMMSFTFAMLPSRGQAAYSEAATVVERTIDSIRQVASFTGESQATAQYNQSLTKAYRTAVQDGVVAGRIIDSAKILAWSFSDSNFSIGDALVTENLPSFVHHKKWFPGAQAFAVGVTSIVFVLIIGFGYVAFFVLRRRKTQEEVEDWELEYWPHRIGFHEIDAATRGFSEENVAVVGGTVKVYKGVLHGVEVAVKRIPQEREEGMREFLAEVSSLGRMKHKNLVGLRGWCKKEKGNLILVYDFMSNGSLDKWIFECEEGMMLTWEERIQVLKNVATGILYLHEGWEVKVLHRDIKANNVLLDKDMNARLGDFGLARMHDHQGQVVSTTRVIGTLGYIAPEVIQRGTASTLSDVFGFGILVLEVICGRRPIEEHKPGLIEWLMSLMVQGQLHSAIDERLKAKGGYTIEEGERFLHLGLLCSHTDPSIRPTMRQVVKILEVEIDSIESDEDNMEMSLLGKIRSATTWSRAECALPYSGYPSFDEVKMFSFNSRTSRSGSSTFPGSESEITSINM* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1306 681 ProSiteProfiles Protein kinase domain profile. 337 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1306 681 SMART serkin_6 337 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1306 681 Gene3D Phosphorylase Kinase; domain 1 299 412 - -
Gso11g1306 681 Gene3D Transferase(Phosphotransferase) domain 1 413 628 - -
Gso11g1306 681 Gene3D ABC transporter type 1, transmembrane domain 61 262 IPR036640 GO:0005524|GO:0016021
Gso11g1306 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Gso11g1306 681 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 238 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g1306 681 CDD ABC_6TM_Pgp_ABCB1_D1_like 69 236 - -
Gso11g1306 681 MobiDBLite consensus disorder prediction 659 681 - -
Gso11g1306 681 Pfam ABC transporter transmembrane region 73 235 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g1306 681 CDD STKc_IRAK 346 607 - -
Gso11g1306 681 SUPERFAMILY Protein kinase-like (PK-like) 312 607 IPR011009 -
Gso11g1306 681 SUPERFAMILY ABC transporter transmembrane region 69 234 IPR036640 GO:0005524|GO:0016021
Gso11g1306 681 Pfam Protein kinase domain 346 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1306 681 PANTHER LECTIN RECEPTOR KINASE 233 669 - -
Gso11g1306 681 PANTHER - 233 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1306 Gso-Chr11 13905813 13911838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1306 236 554 Receptor kinase-like Gene Family AT4G04960 60.736 4.53e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso11g1306 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1306 - - gsj:114372944 1301.19