Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1296 ATGAGCCAGTGTGTTCCTAGTTGGGATGTCGAAGACAACCCACCACCCTCAAGAGTTTCTCTTCGCTCCAACTCCAATTCAACTGCCCCTGATGTTCCCATGTTGGACTACGAGGTTGCTGAGCTGACATGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTAAAACCACCAACAGCCGCCACGAATAAGTACACATGGGAGAAGCCTCGGGGAAGTGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCTTTTCCCACCAGGAAAAGCCCAGACCGTTAAACGGAGACAGTGGTGGTGGTGGTGGAGTTTATGGGAACTTCATGGTCCCATGGTTCGACCCTCATGCTGCCGCCACCACTACGACCACCACCACGAACACCATGACGATGGACGCGTTGGTGCCATGCTCGAACCGGGAGCAGGGCAAGAAGAAGGGTATGGAGCCGGGGCCCGGCACGTGCATGGTGGGGTGCTCCACCCGTGTGGGGTCATGCTGCGGGGGGAAGGGGGCGAAGGGGCATGAGGCGAGTGGGAGGGATCAAAGCGTGAGTGGGAGTGCCACGTTCGGAAGGGATAGCAAGCACGTGACCCTTGACACATGCGACAGGGAGTTCGGCGTGGCTTTCACTTCCACCTCCATCAACTCGCTCGAAAACACCAGCTACGCTAAGCACTGCACCAAGACCACCACCATAGAAGAACATGATTCTGTTTCCCACAGTAAACCAATGGGGGAAGACGGGGATGAAGAGAAGAAAAAGAGAGCAAACGGCAAATCGTCGGTGTCCACTAAAAGGAGCAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAAGTGCAGATGATGAATAGGATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAACTTCAAATGTCGATGATGTCTCCAATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGAATGGATATGAACTCCATGAACCGTGCTAACATCCCTGGCATCCCTCCAGTCCTCCACCCTTCTGCCTTCATGCCCATGGCAGCCTCGTGGGATGCCGCTGTTGCTGCCGCTGCTGGTGGAGGCGACCGCCTTCAAGGGACTCCGGCTTCCGTGATGCCTGACCCTTTGTCCACAATTTTTGGATGCCAATCGCAGCCCATGACCATGGATGCCTACAGTAGACTTGCTGCAATGTATCAGCAGCTGCACCAACCTCCTACTTCTGGTTCCAAGAACTGA 1398 0.5329 MSQCVPSWDVEDNPPPSRVSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTAATNKYTWEKPRGSGTLESIVNQATSFSHQEKPRPLNGDSGGGGGVYGNFMVPWFDPHAAATTTTTTTNTMTMDALVPCSNREQGKKKGMEPGPGTCMVGCSTRVGSCCGGKGAKGHEASGRDQSVSGSATFGRDSKHVTLDTCDREFGVAFTSTSINSLENTSYAKHCTKTTTIEEHDSVSHSKPMGEDGDEEKKKRANGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMDMNSMNRANIPGIPPVLHPSAFMPMAASWDAAVAAAAGGGDRLQGTPASVMPDPLSTIFGCQSQPMTMDAYSRLAAMYQQLHQPPTSGSKN* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1296 465 CDD bHLH_AtPIF_like 276 337 - -
Gso11g1296 465 PANTHER TRANSCRIPTION FACTOR UNE10 1 465 - -
Gso11g1296 465 MobiDBLite consensus disorder prediction 279 294 - -
Gso11g1296 465 Gene3D - 271 337 IPR036638 GO:0046983
Gso11g1296 465 MobiDBLite consensus disorder prediction 17 31 - -
Gso11g1296 465 MobiDBLite consensus disorder prediction 239 266 - -
Gso11g1296 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Gso11g1296 465 Coils Coil 282 302 - -
Gso11g1296 465 MobiDBLite consensus disorder prediction 177 197 - -
Gso11g1296 465 SMART finulus 282 331 IPR011598 GO:0046983
Gso11g1296 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 338 IPR036638 GO:0046983
Gso11g1296 465 MobiDBLite consensus disorder prediction 1 31 - -
Gso11g1296 465 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 465 IPR031066 -
Gso11g1296 465 MobiDBLite consensus disorder prediction 239 294 - -
Gso11g1296 465 Pfam Helix-loop-helix DNA-binding domain 281 326 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1296 Gso-Chr11 13001597 13008532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1296 1 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 48.678 6.61e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g1296 HLH 7.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1296 - - gmx:100787929 828.165