Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1292 ATGGAGTTCGGAGGGAACATGTTCCGCCTCGGCAACAGAGACCAAAATGGAAACACTAACAACAACGGTAACGCTTTCGCTTGGGATTCATGGGAAAACCCCACTAATAGTAATAATAATAATAATAACAATAATAACAGTTCTAGACTGGTCAACGCTTTTCACATCCCCATCGCCTCTGGGATTCCGTCGATGGATGATGGATCCGTCCACGTGATCCGTCATGAGACGGCAGGACTGGCCAGCGCCGTCATGTTTCTTCCTCAAAACGGCGGGGTTTTGGGTCACCGCCAGCAGCAGCATCCGTACGGCGGGGATGGGTCCCACGTGCACCCGGACCCGCACCTCATGTCCTTGAAGCTAGGGAAGAGGCATTACTTTGAGGACACTAGTGGGAGTGGAAGTGTTGTTGGTGCTGCTACTTTTGGTGGAGGGTTGGTGTTCGGGGATAAGAGAGGGAAAGGGTACTCCTCCGGCGGTGGTGCGGGGGTGAAGGCGGCGGGGTTTGCGGCGGCGACGGTGCCGAGGTGTCAGGTGGAAGGGTGCCACGTGGCACTGCTCAACGCGAAGGACTACCATCGGAGGCACAAGGTGTGTGAGATGCACTCTAAAGCTCCTAAAGTCGTGGTCTTAGGCATGGAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTAGCAGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGAGTAA 792 0.529 MEFGGNMFRLGNRDQNGNTNNNGNAFAWDSWENPTNSNNNNNNNNNSSRLVNAFHIPIASGIPSMDDGSVHVIRHETAGLASAVMFLPQNGGVLGHRQQQHPYGGDGSHVHPDPHLMSLKLGKRHYFEDTSGSGSVVGAATFGGGLVFGDKRGKGYSSGGGAGVKAAGFAAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQE* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1292 263 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Gso11g1292 263 MobiDBLite consensus disorder prediction 1 46 - -
Gso11g1292 263 MobiDBLite consensus disorder prediction 11 46 - -
Gso11g1292 263 Pfam SBP domain 177 250 IPR004333 GO:0003677
Gso11g1292 263 MobiDBLite consensus disorder prediction 241 263 - -
Gso11g1292 263 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Gso11g1292 263 SUPERFAMILY SBT domain 175 256 IPR036893 GO:0003677|GO:0005634
Gso11g1292 263 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 22 262 - -
Gso11g1292 263 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 262 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1292 Gso-Chr11 12549875 12553361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1292 117 250 SBP-box Gene Family AT1G27370 51.449 1.88e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso11g1292 SBP 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1292 - - gsj:114372937 467.233