Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1278 ATGGGTCGAGGGAAAATCGAGATCAAAAGAATCGACAATGCTAGCAGCAGACAAGTCACGTTCTCGAAGCGGAGAACAGGGTTGTTCAAGAAGGCTCAGGAACTTTCCATTCTCTGTGACGCCGAGGTTGCTGTCATAGTTTTCTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCCGGTATGAAGCGAACACTTTCAAGATACAACAAATGCCTTGGTTCTACAGATGCTGCTGTAGCAGAAATTATGACACAGAAGGAAGATTCTAAGATGGTGGAGATTCTAAGAGAGGAAATTGAAAAGCTAGAAACAAAGCAATTACAGTTGGTGGGTAAGGATCTGACAGGATTGGGTTTAAAGGAATTGCAAAATTTAGAGCAGCAACTTAATGAGGGGTTATTGTCTGTCAAGGCGAGAAAGGAGGAATTACTCATGGAGCAACTAGAGCAATCTAGAGTTCAGGAACAGCGGGTTATGTTGGAGAATGAAACTTTGCGAAGACAGATTGAGGAGCTTCGGTGTCTGTTTCCACAATCAGAAAGCATGGTCCCATTCCAATACCAACATACTGAAAGAAAGAATACTTTTGTAAATACTGGCGCCAGATGTCTCAACTTGGCTAATAACTGTGGAAATGAGAAAGGGAGTTCAGATACAGCATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGCCCCCAAGAAAGAAACCTTTTCAAATGA 729 0.4307 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSSGMKRTLSRYNKCLGSTDAAVAEIMTQKEDSKMVEILREEIEKLETKQLQLVGKDLTGLGLKELQNLEQQLNEGLLSVKARKEELLMEQLEQSRVQEQRVMLENETLRRQIEELRCLFPQSESMVPFQYQHTERKNTFVNTGARCLNLANNCGNEKGSSDTAFHLGLPAGVQEEGPQERNLFK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1278 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 230 - -
Gso11g1278 242 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g1278 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g1278 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g1278 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso11g1278 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g1278 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g1278 242 Coils Coil 120 143 - -
Gso11g1278 242 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gso11g1278 242 Coils Coil 86 113 - -
Gso11g1278 242 Coils Coil 156 176 - -
Gso11g1278 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso11g1278 242 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gso11g1278 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso11g1278 242 PANTHER MADS BOX PROTEIN 1 230 - -
Gso11g1278 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso11g1278 242 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1278 Gso-Chr11 11915710 11922569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1278 1 232 MADS-box Gene Family AT5G13790 55.128 8.93e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso11g1278 K-box 6.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1278 - - gmx:547732 450.669