Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1266 ATGATGTCTGAAGAAACCTTTTCTGTTCCTCCTCCCAACTCCACCATCAGAGCCACCTCCTTGGTTCATCATCATGCTCATGTTCAACCCCCAAGCCCAAGCCCAAACCCTAATCCTAACCCTAATTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTGGCTCTTTCGCCAAAGTCCCTCATGGCTACCAACCGTTTCTTATGTGAAATTTGCAACAAGGGTTTTCAGAGGGACCAGAATTTGCAGCTGCATAGACGTGGACACAACCTTCCATGGAAGCTGAAACAGAGAGCGAACAAAGATCAAGTGAGGAAGAAGGTGTACGTGTGCCCTGAGAAGAGTTGCGTGCACCATGACCCCTCAAGAGCCTTGGGGGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCTTTTTGTGACGCTTTGGCTGAAGAAAGTGCGAGGGTAACAACAGTTCCAGCAGCTTTAAGCAACTTGAGAAACGATCATCATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTAATTTTTCCGGGTTCCACTCATCAGATCAATTATTCGGTGGTGGATCATCAGAAGCATTATTGGCGAATCATCATCATCATCAACAACAAAAGCTAAGGCTACCACTATGGCTGGATCATCACCAAGTCAATAATAATCCTCAAGTACTTCACCACCACACTCTTAACAACTTCTCAACAAAACCAAATGGTTTCACTACTAATTCAGGTTCAGGACCAAACTCTGTGACTGATCTAGTTCAAACAATGGACATGTTTGGGTCACAGACAGAGTTTGTGAATTACCGTTACCCAGAAGCATCATTTGGAGGTGGCAATGCCAACGTGTCTGTGCTACCGCCACATGAACTGAAGCAAGAACAAGAAGAAAACAAAGAACACTTGTCGCATAGCGGAGCCTCTTATAATAACTTGTACTTGAGTAGTAGTGATATTCAGAACCCACCACCTCATCATCATCACTACATGTCAGCCACCACACTGTTGCACAAAGCGGTTCAAATGGGATCTTCAAGGTTGATGAACGACAACGTATTTGGCTCCATCTTGGGCACCACCACCACCAACAGCAACAACAACAACGTTGTTGTTGAGGTTCAGAAGCTGAACGAGTTGGTGAGTGTGGAAGCTGCTGGGTGCACCAACAACAACCTTGGAGGTGGGTATTTATTAAACGACTCAAACAATAGTAACTCGTTTGTGGTTGTGAATGGCACCAACAAGGGTGGTGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACACAACAAGCATCAATTATGGGAAAGCAATTACACTCATCACTAAGCTCAAATAACAAGAATCAACAACTTGGTTTAACAAGAGATTTCTTGGGTGTTGGAGATCATAATAATAGTATTGACTCTATAAGAAGACCTTTTCTTCAACAAGACCCTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCTCAGCATCAGTCATGAACCTGCAGAGCCAGTACGGTGGACACTACTGCTAG 1725 0.4504 MMSEETFSVPPPNSTIRATSLVHHHAHVQPPSPSPNPNPNPNSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTTVPAALSNLRNDHHHHLTNAQASRIPQINFSGFHSSDQLFGGGSSEALLANHHHHQQQKLRLPLWLDHHQVNNNPQVLHHHTLNNFSTKPNGFTTNSGSGPNSVTDLVQTMDMFGSQTEFVNYRYPEASFGGGNANVSVLPPHELKQEQEENKEHLSHSGASYNNLYLSSSDIQNPPPHHHHYMSATTLLHKAVQMGSSRLMNDNVFGSILGTTTTNSNNNNVVVEVQKLNELVSVEAAGCTNNNLGGGYLLNDSNNSNSFVVVNGTNKGGGLEHMVMPVDEETQQASIMGKQLHSSLSSNNKNQQLGLTRDFLGVGDHNNSIDSIRRPFLQQDPVEFNAMGSASASASVMNLQSQYGGHYC* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1266 574 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Gso11g1266 574 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g1266 574 Gene3D Classic Zinc Finger 55 128 - -
Gso11g1266 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Gso11g1266 574 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 36 532 - -
Gso11g1266 574 SUPERFAMILY beta-beta-alpha zinc fingers 75 173 IPR036236 -
Gso11g1266 574 SMART c2h2final6 118 148 IPR013087 -
Gso11g1266 574 SMART c2h2final6 76 98 IPR013087 -
Gso11g1266 574 SMART c2h2final6 153 173 IPR013087 -
Gso11g1266 574 Gene3D Classic Zinc Finger 129 210 - -
Gso11g1266 574 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 532 - -
Gso11g1266 574 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1266 Gso-Chr11 11725913 11728938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1266 46 223 IDZ Gene Family AT3G45260 84.831 2.41e-114 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1266 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1266 K25870 - gmx:100817691 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1266 11 11725913 11728938 Gso11g1266 11 11725913 11728938 ECH
Gso12g0578 12 5175391 5178205 Gso11g1266 11 11725913 11728938 GST
Gso12g1442 12 37183827 37187343 Gso11g1266 11 11725913 11728938 PCT
Gso11g3392 11 49801940 49804896 Gso11g1266 11 11725913 11728938 PCT
Gso11g1266 11 11725913 11728938 Gso12g1442 12 37183827 37187343 PCT
Gso11g1266 11 11725913 11728938 Gso11g3392 11 49801940 49804896 PCT