Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1262 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGGTGTTGGTGTTACTTGTTGGTCCTCTTCCACTTGTTCATCCTCTACTTCTTCCTCTTCAGCGCTTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAAGTTGCATCTTTCTCTCCTTTCACACCATTGGAGATTCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAAGCTGAGTTGGAAGGGATGTATTTAGAGGGCAAAGAACTTGAGGAATTGGGAGCAGAAGAGGAGGGGGATGATAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCCTCTGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGCCGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCATCACAAGAGCTTGTTGCCAAAGACCTGCATGATGTGGAGTGGAAATTTCGTCACATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGATGGAGCATTTTTGTCAGTCAAAAGAATCTTGTCTCCGGTGATGCAGTGCTCTTCCTAAGGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGATCTTCCTGAATCAGTTATTGGAAGCCAGAACTGCTATCCCAATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCAAGCAGACTTTGTTGTTCCCTACCAAAAGTATGTTAAAAGCATCAAGAATCCAGTGAGCATTGGAACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCAAGAGAGGAGGTGTTGTAGTGGGATGTTGATTGGAACGAGTGATTTGGATCCTTATAGATGGCCCAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATAAAGACAGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAGCTGCGGACAGGTCTGCAGGTTGCCTCACCTAGTCACCTCATCACTGCACGAGGCAGAGGATTGATAGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGGGTCACTCTACTACGGATGTGACACAGTAACCAAGCCACCAGGTTTTGAGATGAGCTCTCAAAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGATTACCTCTTCTGAGCTGAGTAGTGTGCACCCTTTCAGTTATGCAGGCTTTGTGGAAACCAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTTGATATGAACCTTGGTGCTTGGGGAATGCCCAATCTTAGTTGCACAACTTTCAACCTCCACCAGGCAACCAAACCAAGCTTTCAACTTTCATTGTTTCCTTACGGGGATATTCACCAAGCCAGTCAAGCTAGCTTGTTTTGCTCGAAATCCACCACTTTCCAGAGAGAGAATGTCCCATTTAACAAGCCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGAAGATCAGATCTCCCAAATGACCATAAGCTGCAGGGCAATAATATTTCTGCTGCTGGGAATATGGGGGTTTCTATTGACAACAATGTCCAGGGAAAGGTAAATGCCTGCAAACTATTCGGGTTTTCTTTGTCTGGGGAAACTACTACCCAAAATTTGCAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGTGGCTACAATGATCTGCTGAGTGAACTAGAGAGACTGTTTAGCATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAAGATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTTTGCGATGTGGTGTCCAAGATCCATATATACACCCAAGAAGAAGTGGAAAAGATGACAATTGAGATGATCAGTGATGATACTCATAGCTGTTTGGAAGAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGGGTCTAA 2376 0.4453 MEIDLNHEVTEVEKNAFCDRECEKGVGVTCWSSSTCSSSTSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPLEIPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMYLEGKELEELGAEEEGDDRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHDVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAISTKSKFHVFYSPRASQADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCCSGMLIGTSDLDPYRWPKSKWRCLMVRWDEDIETNHKDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITARGRGLIDFEESVRSPKVLQGQENAGFGSLYYGCDTVTKPPGFEMSSQSHPNLGSAEVRKITSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDMNLGAWGMPNLSCTTFNLHQATKPSFQLSLFPYGDIHQASQASLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGRSDLPNDHKLQGNNISAAGNMGVSIDNNVQGKVNACKLFGFSLSGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFSMEGLLKDPDKGWKILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIEMISDDTHSCLEEAPVIMEASKSSSVGQPDYSPTAVRV* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1262 791 Gene3D - 163 267 IPR015300 -
Gso11g1262 791 ProSiteProfiles PB1 domain profile. 663 747 IPR000270 GO:0005515
Gso11g1262 791 CDD B3_DNA 163 265 IPR003340 GO:0003677
Gso11g1262 791 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Gso11g1262 791 SUPERFAMILY DNA-binding pseudobarrel domain 157 276 IPR015300 -
Gso11g1262 791 Gene3D - 659 752 - -
Gso11g1262 791 Gene3D - 328 399 - -
Gso11g1262 791 SMART B3_2 165 267 IPR003340 GO:0003677
Gso11g1262 791 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g1262 791 PANTHER AUXIN RESPONSE FACTOR 9 779 - -
Gso11g1262 791 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Gso11g1262 791 SUPERFAMILY CAD & PB1 domains 666 742 - -
Gso11g1262 791 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 779 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1262 Gso-Chr11 11650837 11657680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1262 47 791 B3 DNA Binding Superfamily AT5G60450 61.741 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g1262 B3 1.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1262 - - gmx:100816621 1548.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1262 11 11650837 11657680 Gso11g1262 11 11650837 11657680 ECH
Gso12g0582 12 5233376 5241167 Gso11g1262 11 11650837 11657680 GST
Gso12g1435 12 37048489 37055027 Gso11g1262 11 11650837 11657680 PCT
Gso11g3397 11 49862813 49868916 Gso11g1262 11 11650837 11657680 PCT
Gso11g1262 11 11650837 11657680 Gso12g1435 12 37048489 37055027 PCT
Gso11g1262 11 11650837 11657680 Gso11g3397 11 49862813 49868916 PCT