Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1259 ATGGATTTGGTACCGAGCGTCAAGGAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCCGTTCTCTCAGATGAACAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAAGAACAGGTGGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATGCTTTTCAACGAGATGTAAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATTCCCGAGAAACCTACCGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTCTGTCGTCTCACTCGTGCAGACCCATTTTGGGTTTCAGTGGCACACCCTTTGCATCCTGTGAAGTTGACCACAACCAGTAATCCAACTGATGGAAACAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTGACTAGAGCTGACATGGACTTAGTATCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGGGATGACGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGCGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGCATGCAGCAGATCCTAAACTCAATCCCAAAGGAGTCTGATGGAGAGAAATTTGAAGAAGCTCTTGCACGTGTCTGCCGTTGTGTTGGGGGAGGAAATGCAGCTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTATCAACCTTCGATGTCCTATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTTAAACCCTGTATTCACATGGGTTGCTTTGATCTTGAAGTTTTTGTGGAAATGAATCAGCGATCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATGAACTGTGGCGAAGAAATTGCAGAGATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCTGGAATTAGGAAATCTAGCACAGTGGCGCCTTCCTGATGGAACCCTTTGTGTTTCAACTGATGGAGATGTTAAGAGAGTGGATACATTGAAGCAGGTTAAACAGGAAGGTGTTTCAGACAGTCCTGCTGGTTTAAAACTTGGCATAAAGAAGAATTGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAATTTGAAAAGGGTTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGTCGGGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACTATTCCACTACAAATGGGATTGAGATGGATTCTTTGTGTCTCAATAATGTTGATTTAGCATATGAATATACTGCACCCAACACTTCTGCCCAGGTGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATCTGTTGGCATCTCCTGCAATTGCATATAAGAACAACAGAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATACTGAAGATCATAATCTTGGTGGAAATTCATGCTTGGGACTCTTTCCTAATGATGATGATTTTGGGATGTCTTCCCTATGGCCATTGCCTTCTGGAAGTCAAGCTGGTCCTGGCTTCCAGTTATTTGGTTCTGATGCAGATGTGTCTGACGCATTGGTCCATCTGCAGCATGGTCCTATGAATTGCTCCTCGTCACTAAATGGTTATGCATTGGCCCCAGATACTGCTTTGGGATCTGGCGGTATCTTGCAAGAGTCCTCTGCTGGTCGCTCAGTTGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTGGCATTTGGTGGAGATGATCCCTCATTTCAGATTTTTCTCCCCACAAGACCAGCAGATTCATCCATGCACAATGAATTGAGAGATCAAGCAAATGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTTAGACTTGGAGGTGGTGCTGGTGGTAACAATGGTGATGCTCCCACTCAAAATGGGTTGAATTCTAGACATCAAATCCCAACCAGAGAAGGCGCCAAGAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGATCTGACAGGGCAAGAAGGCAAAGATCAGATAGCCCTTTCTCCTTTCCTCGGCAAAAGCGTTCAGTAAGGCCCCGCTTGTACCTTTCTATTGATTCAGATTCAGAGTAA 2640 0.433 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKSEFDDAFQRDVKIRCLCGSRLETEDLVKCDDPRCHVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLTRADPFWVSVAHPLHPVKLTTTSNPTDGNNPVQSVERTFQLTRADMDLVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVKRRSMQQILNSIPKESDGEKFEEALARVCRCVGGGNAADDADSDSDLEVVSDTFTINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEIAEIEVKPDGSWRVKVKSESERLELGNLAQWRLPDGTLCVSTDGDVKRVDTLKQVKQEGVSDSPAGLKLGIKKNCNGVWEVSKPEGTNTSSGNNLKRVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNGIEMDSLCLNNVDLAYEYTAPNTSAQVGGAEVIVLSDSEEDNDLLASPAIAYKNNRNDATDGYSVPPPVIVDSYTEDHNLGGNSCLGLFPNDDDFGMSSLWPLPSGSQAGPGFQLFGSDADVSDALVHLQHGPMNCSSSLNGYALAPDTALGSGGILQESSAGRSVADLNGGLVDNPLAFGGDDPSFQIFLPTRPADSSMHNELRDQANVANGVCTEEDWISLRLGGGAGGNNGDAPTQNGLNSRHQIPTREGAKNTLDDTASLLLGMNDVRSDRARRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1259 879 MobiDBLite consensus disorder prediction 805 829 - -
Gso11g1259 879 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Gso11g1259 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Gso11g1259 879 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 810 - -
Gso11g1259 879 MobiDBLite consensus disorder prediction 798 879 - -
Gso11g1259 879 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Gso11g1259 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 447 IPR013083 -
Gso11g1259 879 SMART PHD_3 114 166 IPR001965 -
Gso11g1259 879 Pfam PHD-finger 114 166 IPR019787 -
Gso11g1259 879 Pfam SAP domain 12 42 IPR003034 -
Gso11g1259 879 MobiDBLite consensus disorder prediction 843 857 - -
Gso11g1259 879 MobiDBLite consensus disorder prediction 541 565 - -
Gso11g1259 879 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Gso11g1259 879 Gene3D SAP domain 3 58 IPR036361 -
Gso11g1259 879 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Gso11g1259 879 SMART sap_9 11 45 IPR003034 -
Gso11g1259 879 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Gso11g1259 879 SUPERFAMILY SAP domain 1 59 IPR036361 -
Gso11g1259 879 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Gso11g1259 879 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1259 Gso-Chr11 11622891 11633569 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g1259 PHD 2.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1259 - - gmx:100793735 1745.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1259 11 11622891 11633569 Gso11g1259 11 11622891 11633569 ECH
Gso12g0584 12 5263600 5272590 Gso11g1259 11 11622891 11633569 GST
Gso12g1434 12 37034462 37046866 Gso11g1259 11 11622891 11633569 PCT
Gso11g3398 11 49871867 49881006 Gso11g1259 11 11622891 11633569 PCT
Gso11g1259 11 11622891 11633569 Gso12g1434 12 37034462 37046866 PCT
Gso11g1259 11 11622891 11633569 Gso11g3398 11 49871867 49881006 PCT