Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1252 ATGGACTTCACCCAAGACTTGCACTGTCTCCTATCTGAGCAACGCCGCAAGCTCGCCGCCGCAGAGGCCATGGAATTGGACCTCGACTTCGCCTTCCGCCTCCAGTTAAAGGAAGCCCTCGCGGCCTCCCTCGCCGCCCAGCCCTCCTCCTCCTCCTCCGCCGCCGCCGCGATCATCGAACAACCCGTCGTCGTCATCCACGATGACGACGTCAACGCCATGACGCTGCAGCGCGAGGAGCTGGCGCGTATGGAGCGCGAGATGAAGGACCGGGAGCAGAGCGAGGCGGAGACGCTTAAAATGAGAGAGGAACTCTGCCGTCGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCCGCGATTCCCGAGAAGGACTGGCAGCAGTGGGGAGACAACTTCGAGAAACCATTCGGAGAGGGCTCGTCGTCTTCGTCGCTGAGTAGAGAGGAAGGCGTGGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGACGGAAGGTCGTGTTGTCTGGGATTGGGGTTGCGATTTGCGACCTTAGCGATAATTTGATATTCGAGGTTTCTAAGTCGCTCATTGGAAATGGCACTAGCAAGGTCGCTGCGGAGATTAAGGCTTTGATCGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTCGTTTATTGCTGCGATTATTATCCCCTTTTCCAATTTGTGAGTGGAAAATGGCCTGCAAAACAGCGGAAGATTGCTATTTTGGTTGATCAAGTGAATCTGCTTCAAAGGAAGTTTTCATACTGCAATCCAAGGTTTGTGGCCAGACATGATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCAATTGAATCTCAGTCCACAAGACTTGCAGAATCTGGGAGTAGGAGTTTGAATGAAACTTGTGTCATATGTTTGGAGGAAACTGATGTTGGTCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTCTCATGCATGAAACAGCATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAGTGCCCTCATCAGGGGTGCAAGTATGAGCTCCTAGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACCGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGTCCTTATCCTACGTGCTCTGCATTAATGTCAAAAACTGAGGTCTTAGAGTACTCCAAAGATATCACTGGTCAATCTGAACAATCTGAACCCAAGATATGCCTAAAATGTCGTGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGACATGTAATACTTACAAAAGGATGAATCCTATTCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTGGCATCAAGGAGCCTATGGCAACAGTGTCTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTACGAATTTTGCTATAACTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTGCTTGCCCTCTTTGGGCCGAGGACAATATTTGGTTAGATGATCATGAGGAAGAGTTGGAAGAAGAAGAAGAAGATGATGATAATGATGATTATGATGATTATAGGTCTGATTATCCTGATGATTATTATTATTAA 1677 0.4764 MDFTQDLHCLLSEQRRKLAAAEAMELDLDFAFRLQLKEALAASLAAQPSSSSSAAAAIIEQPVVVIHDDDVNAMTLQREELARMEREMKDREQSEAETLKMREELCRRIHDEKVAREISAIPEKDWQQWGDNFEKPFGEGSSSSSLSREEGVVRVYFKGLVSEENVRGRKVVLSGIGVAICDLSDNLIFEVSKSLIGNGTSKVAAEIKALIEAFNAAIALDLKRVVYCCDYYPLFQFVSGKWPAKQRKIAILVDQVNLLQRKFSYCNPRFVARHDVKFAFKLARDAIESQSTRLAESGSRSLNETCVICLEETDVGQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHQGCKYELLVDSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPTCSALMSKTEVLEYSKDITGQSEQSEPKICLKCRGLFCFNCKVPWHSGMTCNTYKRMNPIPPAEDLKLKFLASRSLWQQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLDDHEEELEEEEEDDDNDDYDDYRSDYPDDYYY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1252 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 385 IPR013083 -
Gso11g1252 558 ProSiteProfiles TRIAD supradomain profile. 302 526 IPR044066 -
Gso11g1252 558 Pfam IBR domain, a half RING-finger domain 465 514 IPR002867 -
Gso11g1252 558 Pfam IBR domain, a half RING-finger domain 375 446 IPR002867 -
Gso11g1252 558 SUPERFAMILY RING/U-box 304 385 - -
Gso11g1252 558 Gene3D - 153 295 IPR036397 GO:0003676
Gso11g1252 558 MobiDBLite consensus disorder prediction 529 550 - -
Gso11g1252 558 ProSiteProfiles Zinc finger RING-type profile. 306 350 IPR001841 -
Gso11g1252 558 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 527 - -
Gso11g1252 558 SUPERFAMILY RING/U-box 388 451 - -
Gso11g1252 558 SUPERFAMILY RING/U-box 460 523 - -
Gso11g1252 558 MobiDBLite consensus disorder prediction 529 558 - -
Gso11g1252 558 Coils Coil 74 94 - -
Gso11g1252 558 ProSitePatterns Zinc finger RING-type signature. 324 333 IPR017907 -
Gso11g1252 558 Gene3D - 443 554 - -
Gso11g1252 558 SUPERFAMILY Ribonuclease H-like 175 287 IPR012337 -
Gso11g1252 558 SMART ibrneu5 373 446 IPR002867 -
Gso11g1252 558 SMART ibrneu5 447 514 IPR002867 -
Gso11g1252 558 Pfam Reverse transcriptase-like 172 286 IPR002156 GO:0003676|GO:0004523
Gso11g1252 558 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 527 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1252 Gso-Chr11 11563051 11567234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1252 154 505 C3H Transcription Factor Family AT2G19610 33.894 3.19e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1252 - - gmx:100790037 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1252 11 11563051 11567234 Gso11g1252 11 11563051 11567234 ECH
Gso12g0589 12 5304651 5308647 Gso11g1252 11 11563051 11567234 GST