Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1241 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGTTTAGTAACGGTGAGTCGCCGTTACCGTTAGAGAAGTTTCCAGACGGTTTGAGGAACCAAATGGCCGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCCAGTAACGGCGGCGGCGACGAGGACTCGGACTCCACACGAGCTGCTGATGACGTGTACACCACTTTCAATTTCGATATCCTTAAAGTCGAAGGCGCGAACGGCTTCGTAACGAAGGAGCTCTTTCCGGTGATGAGTGAAGGAGCTAAAGGACACGCTACGTCGTCGTTTTCAGGGACGAATGGTTTCGTGGATCTCTCGTTCGATGGCGATGGAGGGAACACTAGTGAGATGAAGATGCTTCAGCCTCAGAATCAGAATCAGACTCAAACGCGAACTCAGACACAGCAACCAGCGAAAAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGGGTTACTTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCCAGAGCCTATGATCGAGCCGCTATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGACCTTAAACAGATGCAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGTCGCCAAAGTACTGGTTTCTCAAGAGGAAGCTCTAAATACCGAGGAGTAACACTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTTCTTGGCAAAAAGTATATATATCTTGGACTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACTTATGAAGGAGAGCTGAAATCTGCAGCCATTAATGAAGGAGGCAGTCAGAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGACCTCCCAAAGAAAATTGGGGGCAACTTCAGTTCCCCTCCTTCCCTTACAATACACATGGTGGAAGAAGTTCAATGATGGAAACCAATGTTAGTTCTGGAATTGGTAATCCATCTTTGAAAAGGATGGTTGCAACTGAAGATCGTCCTTCATTATGGAATGGCATGTCTCCTAATTTCTTTCCCAATGGGCAGGAAAGAGCAGAGAGAATCGGCGTTGATCCTTCAAACGGACTCCCCAACTGGGCGTGGCAAACACATGGCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGGCTGCCATCTTTCCAACAAGTTCTATGAACTCAATTCCCCAGAGTCTCTGTTTTACTTCATCCAGCATGCCTACCCGCAATGCATCTGAATATTATTACTAG 1464 0.4754 MLDLNLNAEWTDSFSNGESPLPLEKFPDGLRNQMAESGTSNSSVVNADGSSNGGGDEDSDSTRAADDVYTTFNFDILKVEGANGFVTKELFPVMSEGAKGHATSSFSGTNGFVDLSFDGDGGNTSEMKMLQPQNQNQTQTRTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGELKSAAINEGGSQNLDLNLGIATPGPPKENWGQLQFPSFPYNTHGGRSSMMETNVSSGIGNPSLKRMVATEDRPSLWNGMSPNFFPNGQERAERIGVDPSNGLPNWAWQTHGQVNATPVPTFSAAASSGFSISATFPSAAIFPTSSMNSIPQSLCFTSSSMPTRNASEYYY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1241 487 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 SMART rav1_2 253 316 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 CDD AP2 161 219 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 CDD AP2 252 312 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Gso11g1241 487 Gene3D AP2/ERF domain 252 311 IPR036955 GO:0003700|GO:0006355
Gso11g1241 487 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 464 - -
Gso11g1241 487 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 MobiDBLite consensus disorder prediction 11 62 - -
Gso11g1241 487 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Gso11g1241 487 MobiDBLite consensus disorder prediction 117 162 - -
Gso11g1241 487 MobiDBLite consensus disorder prediction 33 58 - -
Gso11g1241 487 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 MobiDBLite consensus disorder prediction 126 150 - -
Gso11g1241 487 Pfam AP2 domain 252 302 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Gso11g1241 487 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 464 - -
Gso11g1241 487 SUPERFAMILY DNA-binding domain 252 311 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1241 Gso-Chr11 11378917 11383276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1241 75 336 AP2-EREBP Transcription Factor Family AT4G36920 65.683 9.46e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso11g1241 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1241 K09284 - gmx:100812898 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1241 11 11378917 11383276 Gso11g1241 11 11378917 11383276 ECH
Gso12g0602 12 5461644 5466026 Gso11g1241 11 11378917 11383276 GST
Gso15g0384 15 3518645 3523350 Gso11g1241 11 11378917 11383276 PCT
Gso11g3417 11 50087431 50091888 Gso11g1241 11 11378917 11383276 PCT
Gso11g1241 11 11378917 11383276 Gso15g0384 15 3518645 3523350 PCT
Gso11g1241 11 11378917 11383276 Gso11g3417 11 50087431 50091888 PCT