Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1240 ATGGAAAACAATGGTGCTGAATCTGAGAATCCGAAAGGGATTCCAATTCACGGAGGGAAGTACGTTCGCTACAACATCTTAGGCAGCCATTTCCAAGTCTATTCCAAGTACGCTCCCCCTCTCCAACCCGTTGGTCGCGGCGCATACGGCATCGTTTGCTGTGCGACGAATTCGGAGACGAAAGAAGGAGTGGCGATAAAGAAGATTGGGAATGCGTTTGACAACAGGATCGATGCCAAGAGAACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACATAATTAAAATAAAGGACATAATTCGGCCAGCGGAGAGGGAGAATTTCAACGATGTTTATATTGTGTACGAATTGATGGACACCGATCTGCATCAGATTATACAGTCTAATCAGTCTCTCACCGATGAGCATTGCCAGTACTTCTTATATCAACTCTTGCGAGGATTGAAGTACATCCACTCTGCAAATGTTTTGCACCGAGATCTAAAACCAAGCAATTTACTTCTCAACGCAAACTGTGATCTCAAGATATGTGACTTTGGGCTTGCCAGAACAACCTCTGAGACCGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGAGCCCCTGAATTGCTACTAAACTGTTCAGAATATACTGCAGCTATTGATATTTGGTCGGTTGGTTGCATTTTGATGGAGATAGTTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTCCAACAGTTGGCCCTTATAACTGAGTTACTAGGTTCACCAAATGACTCGGATCTTGGATTCCTCAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTCCCACATGTAGAAAAGCAATCCTTCGCAGAGCGGTTTCCTGAAATGTCCCCCTTAGCAATTGATCTTGCTGAGAAAATGCTGGTTTTTGATCCCTCCAAGCGCATAACTGTCGAGGAAGCCCTGAATCACCCCTATATGGCAAGTCTTCATGAGATCAACGAGGAGCCCACTTGCCCAACTCCTTTCATATTTTCTTTCGAACAGACAATTCTCAAAGAAGAAGATATAAAGGAGCTCATATGGAAGGAGTCTCTAAACTTCAGCCAGGATCATCAGATGTTGGAATAG 1122 0.434 MENNGAESENPKGIPIHGGKYVRYNILGSHFQVYSKYAPPLQPVGRGAYGIVCCATNSETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHDNIIKIKDIIRPAERENFNDVYIVYELMDTDLHQIIQSNQSLTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIVRREPLFPGKDYVQQLALITELLGSPNDSDLGFLRSDNAKKYVKQLPHVEKQSFAERFPEMSPLAIDLAEKMLVFDPSKRITVEEALNHPYMASLHEINEEPTCPTPFIFSFEQTILKEEDIKELIWKESLNFSQDHQMLE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1240 373 SMART serkin_6 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1240 373 Gene3D Phosphorylase Kinase; domain 1 21 361 - -
Gso11g1240 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 16 369 - -
Gso11g1240 373 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gso11g1240 373 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Gso11g1240 373 Pfam Protein kinase domain 42 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1240 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Gso11g1240 373 SUPERFAMILY Protein kinase-like (PK-like) 41 330 IPR011009 -
Gso11g1240 373 Gene3D Transferase(Phosphotransferase) domain 1 122 351 - -
Gso11g1240 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 369 - -
Gso11g1240 373 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1240 Gso-Chr11 11317345 11321540 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1240 7 365 MAP Kinase Gene Family AT1G07880 79.387 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gso11g1240 Pkinase 3.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1240 K04371 - gmx:100786314 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1240 11 11317345 11321540 Gso11g1240 11 11317345 11321540 ECH
Gso12g0603 12 5531629 5535619 Gso11g1240 11 11317345 11321540 GST