Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1239 ATGAACAATAATGTTGGGAAAGGGGAAAAAGGTTTGGCAGAACAAAATCATATGTTTTTTAACAAAAAGAGTCTCAATAATGGAGTAGTTAATGAAGGGGTAGGCTCTGGATCATCAACTGAAGATGACACAAGATTTAATAAGGTGGCTGAAGATGGAAACAATGGGTTGAGGGGCCTGATTCAAATCCATGGGAGCTTGCAAATTTCACAACAGCCTCCTCAAGGGCCAGTCGTATGCTGGGAGAGATTTCTCCCTGTAAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAGAAAATGGCATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAAACTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGCGCAGTTGATTTTTTAGTGAAACCAATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCGACCCACACCAGAAAATTTGCAAAGTCAAGAAGTAATGATGCATGTGAAAACAATAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGACTTGAGCGTTCGAGATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCGGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCACTTGTGCCCAAGTGATGCAAACAAAGACTGAAAAAGTTAGTAGTAGATGGGTGCATGCGACAGAAAAAGAGTGCCATGAACTTATTGATCCTCTTGATGATGTTGCAATGGGTAAGGACTTGGCCATGGGAATATCTTTGAATATGCGACTAGAGCATCCACTCAAGGAACTGTCCTGCAATCCAATGATGGGTAAAGGGGCAAATAAGATGTCTGATGTAGATGATATGCAGATCATTAAAAGACAGAGCAATGCCTGTGAAAAAGGACAACTGGAATACAATGGTGATAAAACCAGGACACGGGAAAATCAGGCTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACTCGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGTTTTTCACAATCAAAAGCAAACTGTTGCCCCAAAGAGCATCCATCCCTTGAACTAACTTTGGAAAGGCTGGGAGAAGTAAGAGATGCTAAAAATTTCACAGGTGAAGAATGCAATGTCTTGAGACATTCAGATCAGTCAGCATTCTCAAAATATAATACAGCTTCTGCTAACCAGGCTCAAACTGGAAATGTAGGAAGCTGTTCCCCACTAGACAATAGCTCAGCTGCACCAAATACAGAGACAATGCACAACTTTGCATCTCATTCAAATGGCACTCCTCCAAATCAACAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCATTAATACATATCTTGGCACCAAACTTGATACTTTTGACAAGAAGCCAGAGTCTGGAAGAGGGATTGGCTCGTTTAATTCTCGTGAACTCCAAACTCTGCAGAAGAATAACATCTGTTCATCTCAGAAGAAAACTACTGCCCGGGAAGAATATACAGAAATCATTAAAGAATCAGTAGGAGGCTCTGAACATGGATTCCAAGTCGAGCACACTTACTATCAGCTTCACCATTATAATCACATTGCCCATAAAGCTGCAGTAGATCTCCAATCAGATCATGATCTCTTACTGAAAAGCTCAACTCAGCAATGTGTATCATCAAATGCATTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTATGGTGTGGATGGAAATGCAGCGGAGAGTGATCATGGGAGCAATAATGGACAGGATGGAAGCAACACCTTGACAATCAGAATGATAAATATGGAAAATGGCAATGTGGCTGCTGGGAGCATTGGAATTGGTGGCATTGATAGGAAAAGCTTTGGGAATGGGGCAGATGAAGGACGGCTTGCATTGAGAGAGGCTGCCTTGACCAAATTTCGTCTAAAGAGAAAAGAAAGATGCTTTGAGAAGAAGGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCACGTATTAGGGGACAATTTGTCAGACGAATAGTGTCTGAAGGCAAAGAAGAAAAAGATAAACAAAGTGACAACCTGGTTCCTGGGGATAATTCTATCGACATTCCTCAATAG 2361 0.4189 MNNNVGKGEKGLAEQNHMFFNKKSLNNGVVNEGVGSGSSTEDDTRFNKVAEDGNNGLRGLIQIHGSLQISQQPPQGPVVCWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKVLEDPENGIDLVLTEVAMPILSGIGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATHTRKFAKSRSNDACENNSDSSDENDYGSRDLSVRDGSGTQSSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATEKECHELIDPLDDVAMGKDLAMGISLNMRLEHPLKELSCNPMMGKGANKMSDVDDMQIIKRQSNACEKGQLEYNGDKTRTRENQAMNVIDVTDSNSPLAESRDLNTPNGFSGFSQSKANCCPKEHPSLELTLERLGEVRDAKNFTGEECNVLRHSDQSAFSKYNTASANQAQTGNVGSCSPLDNSSAAPNTETMHNFASHSNGTPPNQQSNGSNNINDMASINTYLGTKLDTFDKKPESGRGIGSFNSRELQTLQKNNICSSQKKTTAREEYTEIIKESVGGSEHGFQVEHTYYQLHHYNHIAHKAAVDLQSDHDLLLKSSTQQCVSSNAFGGPAESNAANYGVDGNAAESDHGSNNGQDGSNTLTIRMINMENGNVAAGSIGIGGIDRKSFGNGADEGRLALREAALTKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRRIVSEGKEEKDKQSDNLVPGDNSIDIPQ* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1239 786 SUPERFAMILY CheY-like 88 214 IPR011006 -
Gso11g1239 786 MobiDBLite consensus disorder prediction 213 261 - -
Gso11g1239 786 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 32 752 - -
Gso11g1239 786 MobiDBLite consensus disorder prediction 655 676 - -
Gso11g1239 786 CDD psREC_PRR 92 195 - -
Gso11g1239 786 Gene3D - 89 278 - -
Gso11g1239 786 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Gso11g1239 786 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
Gso11g1239 786 SMART REC_2 90 205 IPR001789 GO:0000160
Gso11g1239 786 MobiDBLite consensus disorder prediction 484 532 - -
Gso11g1239 786 ProSiteProfiles CCT domain profile. 717 759 IPR010402 GO:0005515
Gso11g1239 786 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 752 IPR045279 GO:0009736
Gso11g1239 786 MobiDBLite consensus disorder prediction 762 786 - -
Gso11g1239 786 Pfam CCT motif 717 758 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1239 Gso-Chr11 11287729 11310133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1239 18 477 Response Regulator Gene Family AT5G60100 45.359 3.29e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso11g1239 Response_reg 7.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1239 K12129 - gmx:100785796 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1239 11 11287729 11310133 Gso11g1239 11 11287729 11310133 ECH
Gso3g0729 3 24671630 24675301 Gso11g1239 11 11287729 11310133 ECH