Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1232 ATGCATTCATTCTTTTTATTCCTCAACCTCTCTACTAAGCTTACTTCTTCCCGATCCACCTTCCCACGCGCCATGTACACACACCGCAACGCCTCGCTCTCACGCGCCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCACCGGACGCATCCACGGCGTCGCCAATGCAGTACTCCGCCGCCGCTCACCACCAACTCGGGCTGGGCGAGTTTGACAACTCGGTTCACGAACTCAATTACTCGGAGATGAGTTCGAGTAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGGCGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATGGTAGGGCCCACCACCAACCCTTTTCTGAGTTCTCTCCTCTTTTCGTTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATTGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGTATGCTTGCAGAAAGACTTTGGCAGATAGCAGGCCACGTATCAGAGGGCGATTTGCAAGGAATGATGAAACTGCTAAGAACCCTCCAGCTCAGTGGAGTCACATGGGAAATGGAGAGGAAGAGGATGAAGAGGAAGAGAATTGGGCTGATTTCTTTGATTCCTTAGTTCCTGCAAATATTGCTCAGGAGCCTCAAGGCAGTAGTTCCTCCTTTGGTGTGTTCTATTAA 894 0.5045 MHSFFLFLNLSTKLTSSRSTFPRAMYTHRNASLSRAAADSLGHFLSPPDASTASPMQYSAAAHHQLGLGEFDNSVHELNYSEMSSSNTYNSCSSGCTSYMGSPSSLASNYESRRVVQRSVSSHSLQKNGRAHHQPFSEFSPLFVEFIDSENGPVRRACSTGDLQRFNGMQHFQHSDSSLSSESSLIIEEMSRTSPYSPEEKKVRIERYRNKRNQRNFGKKIKYACRKTLADSRPRIRGRFARNDETAKNPPAQWSHMGNGEEEDEEEENWADFFDSLVPANIAQEPQGSSSSFGVFY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1232 297 MobiDBLite consensus disorder prediction 239 270 - -
Gso11g1232 297 ProSiteProfiles CCT domain profile. 201 243 IPR010402 GO:0005515
Gso11g1232 297 PANTHER CCT MOTIF PROTEIN 53 297 - -
Gso11g1232 297 Pfam CCT motif 203 243 IPR010402 GO:0005515
Gso11g1232 297 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 53 297 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1232 Gso-Chr11 11193856 11196975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1232 192 246 C2C2-CO-like Transcription Factor Family AT5G24930 49.091 5.62e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g1232 CCT 1.9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1232 - - gmx:102667349 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1232 11 11193856 11196975 Gso11g1232 11 11193856 11196975 ECH
Gso12g0609 12 5634475 5637661 Gso11g1232 11 11193856 11196975 GST
Gso11g3426 11 50221357 50224032 Gso11g1232 11 11193856 11196975 PCT
Gso11g1232 11 11193856 11196975 Gso11g3426 11 50221357 50224032 PCT