LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g1214	ATGGCTCCTAAAGTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAGTTAAGTCTGGTGCTACCTTTAAGAAGAAGGCAAAGAAGATCCGAACTTCTGTCACTTTCCACAGACCGAGGACATTGAAGAAGGATAGGAACCCCAAGTACCCTCGCATTAGCGCGCCTCCAAGAAATAAGCTTGATCATTATCAGATCCTGAAATACCCTCTGACCACTGAATCCGCCATGAAGAAGATTGAGGACAACAACACTTTGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAA	456	0.4561	MAPKVDKKNDPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPRTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g1214	151	MobiDBLite	consensus disorder prediction	1	62	-	-
	Gso11g1214	151	PANTHER	60S RIBOSOMAL PROTEIN L23A	1	151	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g1214	151	MobiDBLite	consensus disorder prediction	24	42	-	-
	Gso11g1214	151	Gene3D	-	32	151	IPR012677	-
	Gso11g1214	151	TIGRFAM	uL23_arch: ribosomal protein uL23	75	151	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g1214	151	ProSitePatterns	Ribosomal protein L23 signature.	129	144	IPR001014	-
	Gso11g1214	151	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	68	144	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g1214	151	Pfam	Ribosomal protein L23	71	133	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Gso11g1214	151	Pfam	Ribosomal protein L23, N-terminal domain	12	61	IPR005633	-
	Gso11g1214	151	PANTHER	60S RIBOSOMAL PROTEIN L23A-2	1	151	-	-
	Gso11g1214	151	Hamap	50S ribosomal protein L23 [rplW].	71	151	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g1214	Gso-Chr11	10974512	10976231	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g1214	24	151	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	89.844	9.81e-68	200

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g1214	K02893		-	gmx:100779362	284.648

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso11g1214	11	10974512	10976231	Gso11g1214	11	10974512	10976231	ECH
	Gso12g0549	12	4925201	4926828	Gso11g1214	11	10974512	10976231	GST
	Gso15g0364	15	3269448	3270976	Gso11g1214	11	10974512	10976231	PCT
	Gso11g3440	11	50353923	50355445	Gso11g1214	11	10974512	10976231	PCT
	Gso11g1214	11	10974512	10976231	Gso15g0364	15	3269448	3270976	PCT
	Gso11g1214	11	10974512	10976231	Gso11g3440	11	50353923	50355445	PCT