Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1213 ATGTCTTCTGATTCTGCAAATGACCTTTCGAAATGGAAACTGGAAGAAGTTATTTCAATTATTATAGTCTGTGTCATCTTTCTTACACTGAGTGATTGCTTCGGCATATTTAAGCGTATGGTGTGTGGAATTTGCCTTGGTAGAAACCAGGTTCAACGGCGACTTCTCGACGAGTCCATTGCCGATGATCCTTCTCTGCAGCAGCTTCAGAGCCGTGGATTGGAGTTCACTGTGGTGCAGTCTCTTCCCACGTTTCAGTTCAAGAAAAACGAGGGAGAACAAGAAAAGGCTGCAATTAGCGTGGAGTGTGCCATTTGCCTCGGAGAGTTTGAGGAAGGGGAGTGGCTGAAACACCTCCCACACTGCAGCCATAGTTTCCATGTTTCATGCATTGACACGTGGTTTCAGTCTCATTCGAATTGTCCTCTTTGTAGATCAGTTGTTCATCATCACATCCTTCAGTGTTCTGTAGCTTCTCACACATTGCTTCAGCCTTTGAGGAGGGAAGACTTTGAAAGGGTTCAATCCATTCACTCTTAA 540 0.4481 MSSDSANDLSKWKLEEVISIIIVCVIFLTLSDCFGIFKRMVCGICLGRNQVQRRLLDESIADDPSLQQLQSRGLEFTVVQSLPTFQFKKNEGEQEKAAISVECAICLGEFEEGEWLKHLPHCSHSFHVSCIDTWFQSHSNCPLCRSVVHHHILQCSVASHTLLQPLRREDFERVQSIHS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1213 179 SMART FANCL_C_2 99 153 - -
Gso11g1213 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 150 IPR013083 -
Gso11g1213 179 SMART ring_2 103 144 IPR001841 -
Gso11g1213 179 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Gso11g1213 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 158 IPR044675 -
Gso11g1213 179 CDD RING-H2_EL5_like 102 145 - -
Gso11g1213 179 PANTHER RING-H2 FINGER PROTEIN ATL2 11 158 - -
Gso11g1213 179 SUPERFAMILY RING/U-box 81 151 - -
Gso11g1213 179 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1213 Gso-Chr11 10972469 10973008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1213 63 149 Rapid Response to Elicitors AT3G16720 51.111 4.07e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1213 - - gmx:121172630 367.466