Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1208 ATGGTTCAACAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTAGTGTATTTTGTTAACATGTTTGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAAGAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAGGCTACCAGGGCGAACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGGAAAAAGAAGGCTCAAGAGAAAAAGCATGCATCAGCAGCATCGCCTGTTTCTTCTAGTTGTCAATCTTCACTGTCCTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGGTTGGAGAAGAGAGTTGTTATGACACAGGTGGATATGATGATGGCATGATGATGGGTTTAATTGGTGGTGAAAAGGGGTACTCCATGGATGATATATGGAAAGATATTATGTCAGAAGAAGAGAACAACATTTATAATAATAATCTTCAACCTGTCTATGAAGGGCATAGTGAAGAGGGATGCAACTTCTCTTGTCCACCACCACCAATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCTTATGGGTGATGGATGAAGAAGAAAGTAATAAGATGTTATTCCCTACACTAAGTGACCAATATTTTCCTTACTATGAACAAGGGAACGCATTTCTAACTGGCTAA 822 0.4197 MVQQEIRRGPWTEQEDYKLVYFVNMFGDRRWDFIAKVSGLKVEGDCLNRTGKSCRLRWVNYLHPDLKRGKLTPQEEHLVMDLHSKWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKKAQEKKHASAASPVSSSCQSSLSSNNHVVDSHASKEVGEESCYDTGGYDDGMMMGLIGGEKGYSMDDIWKDIMSEEENNIYNNNLQPVYEGHSEEGCNFSCPPPPMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFPYYEQGNAFLTG* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1208 273 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 254 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso11g1208 273 Gene3D - 8 67 - -
Gso11g1208 273 MobiDBLite consensus disorder prediction 125 147 - -
Gso11g1208 273 CDD SANT 10 62 IPR001005 -
Gso11g1208 273 ProSiteProfiles Myb-like domain profile. 3 62 IPR001005 -
Gso11g1208 273 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Gso11g1208 273 Pfam Myb-like DNA-binding domain 8 62 IPR001005 -
Gso11g1208 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso11g1208 273 MobiDBLite consensus disorder prediction 116 157 - -
Gso11g1208 273 CDD SANT 72 113 IPR001005 -
Gso11g1208 273 Gene3D - 70 130 - -
Gso11g1208 273 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 254 - -
Gso11g1208 273 SUPERFAMILY Homeodomain-like 5 109 IPR009057 -
Gso11g1208 273 SMART sant 7 64 IPR001005 -
Gso11g1208 273 SMART sant 67 115 IPR001005 -
Gso11g1208 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 62 IPR017930 -
Gso11g1208 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1208 Gso-Chr11 10938183 10939746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1208 1 271 MYB Transcription Factor Family AT5G59780 50.735 3.01e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g1208 Myb_DNA-binding 7.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1208 K09422 - gmx:100776886 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0545 12 4888640 4890185 Gso11g1208 11 10938183 10939746 GST
Gso11g1208 11 10938183 10939746 Gso15g0360 15 3243440 3245072 PCT
Gso11g1208 11 10938183 10939746 Gso11g3445 11 50379084 50380710 PCT