Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1205 ATGGAGGGTGACAATCAATCAAACTGGAGAACATTTTACCAATTGAGCACTTTCAAACAACGTTGTTGTTTTTTGTACACAACCATCAGAGATAAGGAGAGTGAGGTGGGCATGGCTAGTTGTTTAATGTTACTAACCAAAGTTAGTGATACCGAAACCCCATCAAGAAAGAGGGTTCTAAGTGGTGGTGATTTTAAGTGCAAGACTTGTAACAGGAAATTCCAATCGTTTCAAGCACTTGGGGGGCACCGAGCCAGCCACAAGAAGCTAAAGCTCATGGCTTCAAACCTTTCGTGTTCGACCGTGACACAAAAGATGCACCAGTGCCCCATTTGTGGAATTGAATTTGCGATTGGACAAGCACTGGGAGGGCACATGAGAAAACATAGAGCTTCCTTAAACGATGGTTTGATAACTCATGATCATGTTGTGCCAACATCTAGTGGTACTAAAAGGCTTCGTTTGTGCTTGGACTTGAACTTGGCACCGTACGAGAATGATCTCAACCTCAATTTAAGGACACCTACTTTAAATTTGTTCGTTTGA 546 0.4249 MEGDNQSNWRTFYQLSTFKQRCCFLYTTIRDKESEVGMASCLMLLTKVSDTETPSRKRVLSGGDFKCKTCNRKFQSFQALGGHRASHKKLKLMASNLSCSTVTQKMHQCPICGIEFAIGQALGGHMRKHRASLNDGLITHDHVVPTSSGTKRLRLCLDLNLAPYENDLNLNLRTPTLNLFV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1205 181 Gene3D Classic Zinc Finger 63 129 - -
Gso11g1205 181 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gso11g1205 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Gso11g1205 181 SUPERFAMILY beta-beta-alpha zinc fingers 65 129 IPR036236 -
Gso11g1205 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 129 IPR013087 -
Gso11g1205 181 Pfam C2H2-type zinc finger 107 131 - -
Gso11g1205 181 Pfam C2H2-type zinc finger 65 89 - -
Gso11g1205 181 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Gso11g1205 181 PANTHER ZINC FINGER PROTEIN ZAT5 32 180 - -
Gso11g1205 181 SMART c2h2final6 65 87 IPR013087 -
Gso11g1205 181 SMART c2h2final6 107 129 IPR013087 -
Gso11g1205 181 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 32 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1205 Gso-Chr11 10884145 10886074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1205 31 172 C2H2 Transcription Factor Family AT2G28710 45.455 9.14e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1205 zf-C2H2_6 2.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1205 - - gmx:112998408 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1205 11 10884145 10886074 Gso11g1205 11 10884145 10886074 ECH
Gso12g0543 12 4860612 4861492 Gso11g1205 11 10884145 10886074 GST
Gso15g0358 15 3208946 3209752 Gso11g1205 11 10884145 10886074 PCT
Gso11g3448 11 50417073 50417805 Gso11g1205 11 10884145 10886074 PCT
Gso11g1205 11 10884145 10886074 Gso15g0358 15 3208946 3209752 PCT
Gso11g1205 11 10884145 10886074 Gso11g3448 11 50417073 50417805 PCT