Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1199 ATGTCTGCAGCTATGGATATGTCGCTCGACGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAGTTCCCGTGGCCGGATCCGACCCTCCGGTTCCGGACCTTCTCGCCGGTTCCCCAACCGTGCCGCCAACCGCGCCGCTCCTTATGCCACCGCTAAGGCGCCGGAGGCGACGTGGCAGCACGATTTATATGCAGATCAGCAAGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTGGGACTAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCCAGTGACGATATTAAGGAATTGTTTGCTGAAGTTGGTGACCTGAAACGGCATGCGGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAGTTGGATGGGAAACCAATGAAGATTGAGATTGTGGGAACCAACATTTCCACACCTGGTGTGGCTCCTGCTCGTAACGGGGCTATTGGAAATTTTGATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAGGGCGTTCGAAGGGATCGGGGACGGGGAAGAGGTCGTGGCGGAGCAGGTCGCGGTGAAAAGGTATCTGCTGATGATCTTGATGCGGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA 744 0.5188 MSAAMDMSLDDIIKNNKKSGSGSSRGRIRPSGSGPSRRFPNRAANRAAPYATAKAPEATWQHDLYADQQVAAAGYPAQGGRAASIETGTKLYISNLDYGVSSDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPARNGAIGNFDGVPRSGQGRGGALRRPGGRGQGVRRDRGRGRGRGGAGRGEKVSADDLDADLEKYHAEAMQLN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1199 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Gso11g1199 247 CDD RRM_THOC4 89 163 - -
Gso11g1199 247 Gene3D - 67 228 IPR012677 -
Gso11g1199 247 SMART rrm1_1 90 162 IPR000504 GO:0003723
Gso11g1199 247 Pfam C-terminal duplication domain of Friend of PRMT1 190 241 IPR025715 -
Gso11g1199 247 MobiDBLite consensus disorder prediction 14 30 - -
Gso11g1199 247 MobiDBLite consensus disorder prediction 204 233 - -
Gso11g1199 247 SUPERFAMILY RNA-binding domain, RBD 29 163 IPR035979 GO:0003676
Gso11g1199 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Gso11g1199 247 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 246 - -
Gso11g1199 247 MobiDBLite consensus disorder prediction 183 233 - -
Gso11g1199 247 MobiDBLite consensus disorder prediction 1 54 - -
Gso11g1199 247 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 246 - -
Gso11g1199 247 SMART FoP_duplication_2 172 247 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1199 Gso-Chr11 10821833 10826087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1199 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1199 K12881 - gmx:100817317 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1199 11 10821833 10826087 Gso11g1199 11 10821833 10826087 ECH
Gso12g0537 12 4812681 4816951 Gso11g1199 11 10821833 10826087 GST
Gso11g3454 11 50459037 50461925 Gso11g1199 11 10821833 10826087 PCT
Gso11g1199 11 10821833 10826087 Gso11g3454 11 50459037 50461925 PCT