Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1190 ATGGAGAGTGGGAATAATACTAATCATGAGTTGGAGATGGAAATGGAGAGTGGAGGGAGTAATGGTAATGAGGGGGTTGCAGCGAGTTCGCGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAATTTGTATAAGCAGGGAATAAAGACTCCGAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAACCACAAAGCCAGACAGAGACAGAAGCAGAAGCAAGAAACCTTTGCTTACTTCAATCGCTTTCTTCATACGCCTCAGCCTTTTTTTTCTCCGCCAATTTGCCCAAATGCCATGTGTGCCCCATATTACATACCTCAGGGACAGGGTGAAATTGGGTTTTATCCCCCACACCAAAAGGTATTTGTACCCGTAGGTTTTAGGAGGAGCCCCTCTGAGAAAGTTGTGCCCACAGGCATGATAAGTAGTAATGGCCCTCTGGTATACGACGGCATGCATCAAATGCAACAGAGAATCTCGGATTGCAGCAACTCTCACTTCAGTCACCAAGAAACGTTGGATCTTTTCCCTCTGCACCCAACCGGCATTTTGGAAGGGAAAACAACAACAACAACAGGCCAGGTGTCTTCTCTGGCTTCAGTAGTTTCTGCTGATAGTTCCACTGATACACCTTCTGCTGATGACATCAATGAAGATGATCATGCTTCCCCACTGAACCAACCCTTCTTTGATTTTTTTACTACTTCTGGACAAGGTTCTTATTAA 786 0.4529 MESGNNTNHELEMEMESGGSNGNEGVAASSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETFAYFNRFLHTPQPFFSPPICPNAMCAPYYIPQGQGEIGFYPPHQKVFVPVGFRRSPSEKVVPTGMISSNGPLVYDGMHQMQQRISDCSNSHFSHQETLDLFPLHPTGILEGKTTTTTGQVSSLASVVSADSSTDTPSADDINEDDHASPLNQPFFDFFTTSGQGSY* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1190 261 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Gso11g1190 261 MobiDBLite consensus disorder prediction 1 30 - -
Gso11g1190 261 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Gso11g1190 261 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 258 IPR044555 GO:0003700|GO:0099402
Gso11g1190 261 SUPERFAMILY Homeodomain-like 30 97 IPR009057 -
Gso11g1190 261 CDD homeodomain 31 91 IPR001356 GO:0003677
Gso11g1190 261 SMART HOX_1 27 94 IPR001356 GO:0003677
Gso11g1190 261 Gene3D - 29 98 - -
Gso11g1190 261 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 14 258 - -
Gso11g1190 261 MobiDBLite consensus disorder prediction 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1190 Gso-Chr11 10726709 10728464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1190 23 254 Wox Gene Family AT5G59340 43.922 2.01e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso11g1190 Homeodomain 5.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1190 - - gmx:100801698 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1190 11 10726709 10728464 Gso11g1190 11 10726709 10728464 ECH
Gso12g0528 12 4731943 4734453 Gso11g1190 11 10726709 10728464 GST