Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1185 ATGGCCATGGATGAGTATGAATGTCATGAGATGGTCCACGTGGCAGTTGGCAAGTCCCTCAAGAAAGCCGCCACTTTGCTTCAATGGTGTTTTACCCATTTCAGCAAACCACAGATTTTCTTACTTCATGTTCACCAACCTTCTACTATGATCCCCACACTGTTGGGGAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTGGTGTCTGCTTATAGAATAGAAGAAAAAGAAGACACCAAGAGGCTTTTGGAGAAGTACTTGAGCCTTTGCCGTGCTGCTAAGGTTAAGGCAAGCAGTGTCATTGGTGAAGCTGATCAAGTCCAGAAAGGGATTGTTGACTTGGTTACTGTGCATAATGTCAGGAAGCTTGTTATTGGAGCAATACCAGAAAATTGCATGAAAATCAAAAGGAATTCCAGCAAAGCAAATTATGCTGCCAAAAATGCTCCCCCATTCTGTGAAATATGGTTTGTCTATAATGGTAAGCACATTTGGACAAGAGAAGCTTCCGAAACACCTCGTTCTTTGTCTTCACGTGCCCAACCTGAGACTACAACTGCAGAGAGTTTGAGTTGCAGATCTTTTCATGATGGTACGAAAGAATTGTTACATTCAGAATGTCTTCAATTAAATTCTACAAAGACTACAAGAAGTATGGTTCAGAGTGAAATCATTGAAGCAGAAGCTACTTTTTCATCCAAATCATCCAGTTGTAATAGTCATTGTTCTCCCCAACATTCGGCCGGTTGGTATTTAGATACTCATTCAGAGTTTGAGGAAGAAACAATTGATAGTCAACTTATTGAAACCAAGAGAGAAGCTAAGGCTGCAACAGACAAGGCCCTAGCAGAGCTGTTGAAGAGCAAAAGGTTGGAAGTCAAAGCCATTGAAGCCATTAGTAAGGTCAACTTTTTTGAGTCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTAAGAGCTACAATACAGGAGCAACAGATGTTCTTGGATGAGAAAGAAGAAATTGCTAGGGAGTTGGAAAGGACTGTGAGAAGTATTTCCCTTCTAGGCAATTGTGCACATGAAACCAACCATAAGCGAGATGAAGCTGAAAATGAACTATCACTAATTCAAGCATCCATCTCAAACCTGTGGCATGAAAAGCAGCAAATCAGGCAGCAGAAAATGGAAGCCCTACACTGGCTTGAGCGGTGGAAAAGTTGCGGACAAGTTGGAGCAGATCACTGCAATGGAGTCATTGGGTTTGCTGAAGAATTCCCTGAGCTTGCCGAATTTTCATTATCAGATCTTCAAAATGCCACATGCAATTTTTCTGAGAGTTTCAAAGTTATGGAGGGTGGATATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATCCACACAACATGCAAGGATCATCAGAGTTTCATCAAGAGGCTCAAATTCTTGGTAGTCTCCAACACCCTCATCTGGTTACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCATTTGTATATGAGTACTTGCCCAGTGGAAGTCTCCAAGATTATCTATTCCGAAAAAGCAGTTTTCTGCCATTGACTAGGAACATCCGAGCACAATGGATTGCCGAAATTGCTACAGCTCTCTGCTTCTTGCATTCTTCAAAACCTGAAACTATTATCCACGGTGGTCTGACTCTTGAAACTGTCCTTCTGGACTCTGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGAAAGAGGAGTCAGTTTATCTTCCTAACTTCCACTTCAGCACTGAGCCAAAGGGTTCTTTTACATATACAGATCCTGAATTTCAGAGAACTGGAGTACTGACACCTAAGTCTGACATATACTCTTTTGGAATCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGTGGGTGAAGTACGGAGAGCAGTTTCTTGTGGAAAATTGTATCCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCACCATGGCAACACGATTGGCTGAACTAGGATTGCAATGCTGCCAACTGAACAGTAGAGTCAGACCAGAGTTAACACCTTCTCTAGTGAGAGAATTGAAGCAGTTGCTTGTTTTAGAAGAGCGACCTGTACCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGCTGGAAAATGGACATGAAACTTCTCCTATGACTAATTTAAAATTGACTCACCTGAATCTCACTCCCAATCATGCACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGA 2361 0.4223 MAMDEYECHEMVHVAVGKSLKKAATLLQWCFTHFSKPQIFLLHVHQPSTMIPTLLGKLPASQASPEVVSAYRIEEKEDTKRLLEKYLSLCRAAKVKASSVIGEADQVQKGIVDLVTVHNVRKLVIGAIPENCMKIKRNSSKANYAAKNAPPFCEIWFVYNGKHIWTREASETPRSLSSRAQPETTTAESLSCRSFHDGTKELLHSECLQLNSTKTTRSMVQSEIIEAEATFSSKSSSCNSHCSPQHSAGWYLDTHSEFEEETIDSQLIETKREAKAATDKALAELLKSKRLEVKAIEAISKVNFFESAHAHEVKLRKEAEDALRATIQEQQMFLDEKEEIARELERTVRSISLLGNCAHETNHKRDEAENELSLIQASISNLWHEKQQIRQQKMEALHWLERWKSCGQVGADHCNGVIGFAEEFPELAEFSLSDLQNATCNFSESFKVMEGGYGSIYKGEMLGRTVAIRKLHPHNMQGSSEFHQEAQILGSLQHPHLVTLLGVCPEAWSFVYEYLPSGSLQDYLFRKSSFLPLTRNIRAQWIAEIATALCFLHSSKPETIIHGGLTLETVLLDSALSCKICEFGFSRLVKEESVYLPNFHFSTEPKGSFTYTDPEFQRTGVLTPKSDIYSFGIIILQLLTGRTPVGLVGEVRRAVSCGKLYPILDSSAGEWNSTMATRLAELGLQCCQLNSRVRPELTPSLVRELKQLLVLEERPVPSFFLCPIFQEIMHDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLTHLNLTPNHALRLAIQGWLCKS* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1185 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 786 IPR013083 -
Gso11g1185 786 Pfam U-box domain 716 785 IPR003613 GO:0004842|GO:0016567
Gso11g1185 786 SUPERFAMILY Protein kinase-like (PK-like) 426 701 IPR011009 -
Gso11g1185 786 Gene3D Phosphorylase Kinase; domain 1 419 514 - -
Gso11g1185 786 SMART Ubox_2 719 782 IPR003613 GO:0004842|GO:0016567
Gso11g1185 786 Coils Coil 358 378 - -
Gso11g1185 786 PANTHER OS02G0152300 PROTEIN 8 785 - -
Gso11g1185 786 Pfam Protein tyrosine and serine/threonine kinase 448 698 IPR001245 GO:0004672|GO:0006468
Gso11g1185 786 Gene3D Transferase(Phosphotransferase) domain 1 515 714 - -
Gso11g1185 786 ProSiteProfiles Protein kinase domain profile. 442 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1185 786 MobiDBLite consensus disorder prediction 170 191 - -
Gso11g1185 786 Gene3D HUPs 7 134 IPR014729 -
Gso11g1185 786 SUPERFAMILY RING/U-box 713 785 - -
Gso11g1185 786 Coils Coil 327 354 - -
Gso11g1185 786 CDD RING-Ubox_WDSUB1_like 720 761 - -
Gso11g1185 786 ProSiteProfiles U-box domain profile. 715 786 IPR003613 GO:0004842|GO:0016567
Gso11g1185 786 PANTHER OS10G0100500 PROTEIN 8 785 - -
Gso11g1185 786 CDD STK_N 12 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1185 Gso-Chr11 10651957 10657761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1185 10 783 U-box Gene Family AT2G45910 35.105 3.85e-153 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso11g1185 PK_Tyr_Ser-Thr 1.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1185 - - gmx:100799032 1569.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1185 11 10651957 10657761 Gso11g1185 11 10651957 10657761 ECH
Gso11g3467 11 50592750 50597436 Gso11g1185 11 10651957 10657761 PCT
Gso11g1185 11 10651957 10657761 Gso11g3467 11 50592750 50597436 PCT