Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1181 ATGGGAGTTTGTTTGAGCACCCAAATTAAAGCTGGGTTAAATTCAAAGCATGTTAGTGCCGATGCAAAAGATCACAGCAGTCCAATTAGCAATAAAATTACAAAAGATGTCAGCACACCAATCAGTAAAGTCTCAGAGGTATCAGTGCCTCAGACTCCTCGGATTGAGGGTGAGATCTTGCAGTCATCCAATCTGAAGAACTTTAGTTTGACAGAACTCACAGCTGCCACAAGAAATTTCCGTAAAGACAGTGTTTTAGGAGGAGAAGGTGATTTTGGATCAGTTTTCAAGGGCTGGATTGATAATCAATCACTGGCTGCTGCCAAACCTGGCACTGGCGTTGTTGTTGCAGTGAAAAGACTTAGTCTGGATAGCTTCCAAGGTCAGAAGGATTGGTTGGATGAAGTAAACTATCTAGGCCAGCTTTCTCATCCTCATCTAGTGAAATTAATTGGGTATTGCTTTGAAGATGAAGACCGACTTCTGGTCTATGAATTTATGCCTCGTGGTAGCTTGGAGTATCACTTGTTCATGAGAGGCTCGTATTTTCAACCTCTTTCTTGGGGTCTCCGTTTGAAAGTTGCTCTTGGCGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATACCGAGATTTCAAGACCTCAAATGTCTTGCTGGATTCAAATTATAATGCAAAGCTTGCTGATTTGGGGCTGGCAAAGGACAGACCAACACGTGAGAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCAAACCACAGGAAATCTGAGTGCCAAGAGTGATGTCTTCAGTTTTGGAGTAGTCCTGCTGGAAATGTTATCTGGCAGGAGGGCTGTGGACAAGAATAGACCATCAGGACAACACAATTTGGTGGAATGGGCCAAACCATACTTAGCCAACAAACACAAACTTTTGCGTGTGTTGGATAATCGCCTTGAAGGCCAATATGCATTAGATGAGGCATGTAAGGTGGCTACCCTCTCTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAACCATGGACGAGGTTGTCACGGATTTGGAGCAGCTGCAGGTTCCCCATGTGAATCAAAATCGTTCTGTGAATGCCTCTCGCGGTCGTAGAAAAAGTGCTGATGATTTTACTCATGGTAGAATCGCCACAGCTTCTGTTTCCCCGCTCTCACATGACATTGCAAATACACGTCCTTGA 1239 0.4439 MGVCLSTQIKAGLNSKHVSADAKDHSSPISNKITKDVSTPISKVSEVSVPQTPRIEGEILQSSNLKNFSLTELTAATRNFRKDSVLGGEGDFGSVFKGWIDNQSLAAAKPGTGVVVAVKRLSLDSFQGQKDWLDEVNYLGQLSHPHLVKLIGYCFEDEDRLLVYEFMPRGSLEYHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLADLGLAKDRPTREKSHVSTRVMGTYGYAAPEYQTTGNLSAKSDVFSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPYLANKHKLLRVLDNRLEGQYALDEACKVATLSLRCLATESKLRPTMDEVVTDLEQLQVPHVNQNRSVNASRGRRKSADDFTHGRIATASVSPLSHDIANTRP* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1181 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gso11g1181 412 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 35 380 - -
Gso11g1181 412 Gene3D Transferase(Phosphotransferase) domain 1 167 388 - -
Gso11g1181 412 CDD STKc_IRAK 88 366 - -
Gso11g1181 412 PANTHER OS01G0588500 PROTEIN-RELATED 35 380 - -
Gso11g1181 412 ProSiteProfiles Protein kinase domain profile. 81 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1181 412 Pfam Protein tyrosine and serine/threonine kinase 88 363 IPR001245 GO:0004672|GO:0006468
Gso11g1181 412 MobiDBLite consensus disorder prediction 372 395 - -
Gso11g1181 412 SUPERFAMILY Protein kinase-like (PK-like) 58 370 IPR011009 -
Gso11g1181 412 Gene3D Phosphorylase Kinase; domain 1 56 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1181 Gso-Chr11 10622478 10626055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1181 58 363 Glycoside Hydrolase AT3G07070 49.032 1.12e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso11g1181 PK_Tyr_Ser-Thr 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1181 - - gmx:100809679 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1181 11 10622478 10626055 Gso11g1181 11 10622478 10626055 ECH
Gso12g0520 12 4644824 4648457 Gso11g1181 11 10622478 10626055 GST
Gso15g0336 15 3018723 3021733 Gso11g1181 11 10622478 10626055 PCT
Gso11g3473 11 50638615 50641692 Gso11g1181 11 10622478 10626055 PCT
Gso11g1181 11 10622478 10626055 Gso15g0336 15 3018723 3021733 PCT
Gso11g1181 11 10622478 10626055 Gso11g3473 11 50638615 50641692 PCT