Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1180 ATGAAGTGTTTCTATTTCTCAAACGGAGAAGACGAGGATTCCGTGGGGGGAGGAGCGGCGGCGAGTTCGCGCGGCGGCTCCACCTCGCGCGTGTCGTGGGCTCGTTCGCTGAGCCTGATGGACACGCGCAGCAGCAGCCGCTCCCACTTCGACTCCGAGTCGACGGAGTTCTCCGACACGGTGGACTTCCACCACTTCCTGGCGCAGCGCCGCGCCAACGATCTCCGTCTCTTCTCCTTCTCCGACCTGAAATCCGCCACGCGCGCCTTCAGCCGCGCCCTCCTCGTCGGCGAGGGAGGCTTCGGCTCCGTCTACCGCGGCTTCCTCGACCAAAACGACGTCGCGATCAAGCAGCTGAACCGCAACGGCCACCAAGGGCACAAGGAGTGGATCAACGAGGTGAACCTGTTAGGTGTCATGAAGCACCCTAATTTGGTGAAGTTGGTTGGGTACTGTGCCGAAGACGATGAGAGAGGGATTCAGAGGCTTTTGGTTTACGAGTTTATGCCGAATAAGAGCTTGGAGGATCATCTCCTTGCAAGAGTGCCATCGACGATAATCCCTTGGGGAACCAGGTTGAGGATCGCGCAGGATGCGGCGAGGGGTTTGGCGTATCTTCATGAGGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACATCCAACATCTTGCTGGACGAGAATTTCAATGCAAAGCTTTCTGATTTTGGACTGGCTAGGCAAGGACCCTCAGAAGGGTCTGGCTATGTTTCAACAGCAGTTGTCGGCACCATAGGTTATGCTGCACCTGAGTATGTTCAGACTGGTAAGCTAACTGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCTGTAGAGAGAAACCTACCAAAAAATGAGCAAAAGCTTTTGGAATGGGTAAGACCTTATGTTTCTGATCCTAGGAAGTTCTATCGTATTGTAGACCCCCGACTTGAGGGACAATACTGCATCAAATCAGCTCATAAACTTGCAATTCTAGCAAACAAGTGCATCATGAAGCAGCCAAAGTCCCGTCCAAAAATGAGCGAGGTGGTTGAGTCTCTTGGAAGCATTATTAATGAGATTGTTCCTCAGGATGAACAAATCCCCCAAGCTGCTGTAGTAGCAATTGGAGAAGAAAAAGAAGAAAAGTTATCTGTAGAGAACACTAAACCTGAACCTTCAGCTAAACAAGGGAACTATTACCTGAAGAAGGTTTTTGAATTGAAAGATATTGTCAGCTTAAGAAATAAGTCTATTGGAAGGTTAGATTGGAAAAGTTGGGCACCTGGGCTAGTAAGAACTTGGTGA 1341 0.4981 MKCFYFSNGEDEDSVGGGAAASSRGGSTSRVSWARSLSLMDTRSSSRSHFDSESTEFSDTVDFHHFLAQRRANDLRLFSFSDLKSATRAFSRALLVGEGGFGSVYRGFLDQNDVAIKQLNRNGHQGHKEWINEVNLLGVMKHPNLVKLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLARVPSTIIPWGTRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRPYVSDPRKFYRIVDPRLEGQYCIKSAHKLAILANKCIMKQPKSRPKMSEVVESLGSIINEIVPQDEQIPQAAVVAIGEEKEEKLSVENTKPEPSAKQGNYYLKKVFELKDIVSLRNKSIGRLDWKSWAPGLVRTW* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1180 446 Pfam Protein kinase domain 95 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1180 446 ProSiteProfiles Protein kinase domain profile. 90 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1180 446 MobiDBLite consensus disorder prediction 1 27 - -
Gso11g1180 446 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 27 396 - -
Gso11g1180 446 ProSitePatterns Protein kinases ATP-binding region signature. 96 117 IPR017441 GO:0005524
Gso11g1180 446 SUPERFAMILY Protein kinase-like (PK-like) 73 365 IPR011009 -
Gso11g1180 446 CDD STKc_IRAK 96 368 - -
Gso11g1180 446 Gene3D Phosphorylase Kinase; domain 1 70 168 - -
Gso11g1180 446 PANTHER OS01G0588500 PROTEIN-RELATED 27 396 - -
Gso11g1180 446 Gene3D Transferase(Phosphotransferase) domain 1 169 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1180 Gso-Chr11 10617123 10620063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1180 76 366 Glycoside Hydrolase AT3G07070 51.701 3.14e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso11g1180 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1180 - - gmx:100305425 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1180 11 10617123 10620063 Gso11g1180 11 10617123 10620063 ECH
Gso12g0519 12 4641439 4643801 Gso11g1180 11 10617123 10620063 GST