Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1175 ATGGATCCTCATTTGAAGTCCAATTTCATCAATGGTGTTAAACCCAGCCAAGTGCCCAACACTGTCGATGTAGAGGATCACTCCTTTGACCCTGTTAATGGGATGATGAAACCCTTTGATTTTGGATTCATGGATAACCGGTTTCTTATTTCGCCTGATCCAAATGCTGCTCAAAATCCCTTTTCCTCGTCCACTGATGAAGACTATCCATTGGATGAGATTGATTTTTCTGCCACTGTCCTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCAAAGCCGTGTATGTTCCATGATACCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGTCATTGGTGAGACATACCATTCTTCTTCCATCCAAAACTATCACAACATGGACAGCCCCGATGAGAGTAGCTTCAGTGGTGCAACAACTAGCACTAGTAACTCGTTTGAGTCGCAATGGAATAATGTTGATCTTGCTGACTATAAGCCTTCCATACTGCAAACCACTTTTCCTGCTGACTTTGTTTTCCAGGCCAGTTCGATCCAATCTTCAATGAATACCACAAGCAACTTTGCTGTAACCAATAGTCAATTCTTGGCAAGTTCCGTGGCTGGATTTTTGGATCCAGGTTCAACAAACTTGTTTAGCAAGAGTGAGTCTGTACTGCAATTTGAGAGGGGTGTGGAGGAAGCCAATAAGTTCCTGCCTAAATGGAATCCTTTGGTTTTTGACTTGGAGAACCCATCTTTTAGAATGGTTCCCCCTCAGCAGGTGAAAATTAAGGCGGAGACAGAGAGAGATGAAATTTCTGCTGAGTCAAGAGGAAGGAAGAATCATGAGCGGGAAGATGAAGAAGCAGATTTACAAGATGGGAGAAGCAACAAGCAGTCAGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTCCTGCTGGGCACAGGGTGCAGAAATGAGCAAGCTCCTTCGTGTATTGGTCACGCAGACCTTCCTAATGGGCCATCCTTGGGTAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCATGTTAAGAAACAAGGCAGCAAGAAGGAAATTGTGGATCTGAGGACATTGTTGATTCTATGCGCACAAGCTGTTTCTTCTGATGATCGCATGTCTGCTAATGAGTTATTGAAGCAGATAAAGCAACATGCTTCTCCACTGGGGGATGGGACTCAGAGGCTGGCCCAATGCTTTGCAAGTGCCCTTGAAGCACGCTTGGTTGGCACCGGAACTCAGATTTATACTGCTTTATCTCACAAAAGAACCTCTGCTGCAGACATGGTGAAAGCTTACCAAATGTATATTTCAGCCTGTCCATTCAAGAAGCTTTCAATGATTTTTGCAAACCATACAATTTTGCATTTAGCCAAGGAAGTTGAAACTCTTCATATTATAGATTTTGGCATCCGTTATGGCTTCCAGTGGCCAGCTCTTATTTATCGTCTATCAAAACAACCCGGTGGGCCTCCCAAGCTGCGCATTACAGGGATAGAGCTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACGGGGCTTCGACTTACAAGGTATTGTGATCGCTTTAATGTTCCATTTGAGTTCAATGCCATTGCACAGAAATGGGAAACTATCAAAATTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGTTGCGAATGCTATGTTTCGATTTCAAAATCTACTTGATGAGACAGTTGTGGTGAATAGTCCCCGGGATGCTGTTTTAAAGTTAATAAGGAAGGCAAATCCTGCTATCTTTTTACATGCTAATGTCAATGGGAGCTATAATGCTCCATTCTTTGTGACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACCAATGTTGCTTGTGAAGATCCAATGAGGTTGATGTTTGAGAGAGAGTTCTTTGGGCGGCAGGTAATGAATATTGTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGGCCTGAGACATACAAGCAATGGCAGGTTAGGAACATGAGAGCTGGATTTAAACAATTGCCCTTGGATAAACATCTCATTAACAAATTAAGATGCAAGTTGAAAGATGCGTACCACAGTGATTTCATGCTTCTTGAAGATGACAACTACATGCTGCAAGGTTGGAAGGGCCGAGTAGTTTATGCTTCCTCCTGTTGGGTGCCTGCATAG 2229 0.4347 MDPHLKSNFINGVKPSQVPNTVDVEDHSFDPVNGMMKPFDFGFMDNRFLISPDPNAAQNPFSSSTDEDYPLDEIDFSATVLRYINQMLMEEDLEAKPCMFHDTLALQAAEKSFYEVIGETYHSSSIQNYHNMDSPDESSFSGATTSTSNSFESQWNNVDLADYKPSILQTTFPADFVFQASSIQSSMNTTSNFAVTNSQFLASSVAGFLDPGSTNLFSKSESVLQFERGVEEANKFLPKWNPLVFDLENPSFRMVPPQQVKIKAETERDEISAESRGRKNHEREDEEADLQDGRSNKQSAVYIDDSEISELLDKVLLGTGCRNEQAPSCIGHADLPNGPSLGKLEETNKSGGGKSHVKKQGSKKEIVDLRTLLILCAQAVSSDDRMSANELLKQIKQHASPLGDGTQRLAQCFASALEARLVGTGTQIYTALSHKRTSAADMVKAYQMYISACPFKKLSMIFANHTILHLAKEVETLHIIDFGIRYGFQWPALIYRLSKQPGGPPKLRITGIELPQPGFRPAERVQETGLRLTRYCDRFNVPFEFNAIAQKWETIKIEDLKIKENELLVANAMFRFQNLLDETVVVNSPRDAVLKLIRKANPAIFLHANVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVACEDPMRLMFEREFFGRQVMNIVACEGCERVERPETYKQWQVRNMRAGFKQLPLDKHLINKLRCKLKDAYHSDFMLLEDDNYMLQGWKGRVVYASSCWVPA* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1175 742 ProSiteProfiles GRAS family profile. 360 740 IPR005202 -
Gso11g1175 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 741 IPR005202 -
Gso11g1175 742 PANTHER SCARECROW-LIKE PROTEIN 14 47 741 - -
Gso11g1175 742 MobiDBLite consensus disorder prediction 262 293 - -
Gso11g1175 742 MobiDBLite consensus disorder prediction 330 362 - -
Gso11g1175 742 Pfam GRAS domain family 369 739 IPR005202 -
Gso11g1175 742 MobiDBLite consensus disorder prediction 256 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1175 Gso-Chr11 10554484 10557978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1175 80 742 GRAS Transcription Factor Family AT1G07530 55.222 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso11g1175 GRAS 9.6e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1175 - - gmx:100796903 1498.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1175 11 10554484 10557978 Gso11g1175 11 10554484 10557978 ECH
Gso12g0513 12 4585233 4588478 Gso11g1175 11 10554484 10557978 GST
Gso15g0328 15 2958002 2960413 Gso11g1175 11 10554484 10557978 PCT
Gso11g3481 11 50693637 50696229 Gso11g1175 11 10554484 10557978 PCT