Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1166 ATGAGTTTTGTCTTCCGAGGGAGTAGGGGAGATATTGAAAGTGGCTTTTCAGAATATGTTCCTGAAAGAACCTTGATGCGGGTTCATCCAGCTCGACCAGTTAATGGCAATTCTCTAGCTTTTCTTATCACAGTTATTTTGATATTCATGATATTAAACTCCCCTCAGATGTTACATCATTTTTTGCTCTGGGTTGTACTGGCTATCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATACTGAACTTCGTCTTCACATGCCATCATCTATTGCGATTGCAACCAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTATTCACACTTATAAAGTTCCAGTCCCACCAAAAGATGGCTCAGCTGGTTTGGCGTCCTCTTCAGGTGCAGCTGAGATTAAACAAGCCTCTGGAGGAACAGAGGCAGGTGCCAAAGGTTCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGAGAGCTTGTTCGTAGCTTACCATGCTTGCATCAGTTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGTAAGTGGGGGAAACAGGGAAAGCGAGTCCGATGGTTCAGATATTGCCTAG 825 0.4533 MSFVFRGSRGDIESGFSEYVPERTLMRVHPARPVNGNSLAFLITVILIFMILNSPQMLHHFLLWVVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLGHTELRLHMPSSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTRSMTEEEINALPIHTYKVPVPPKDGSAGLASSSGAAEIKQASGGTEAGAKGSEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRIGSVSGGNRESESDGSDIA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1166 274 SUPERFAMILY RING/U-box 207 258 - -
Gso11g1166 274 Pfam Ring finger domain 211 253 IPR001841 -
Gso11g1166 274 PANTHER TARGET OF ERK KINASE MPK-1 1 273 - -
Gso11g1166 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Gso11g1166 274 SMART ring_2 212 252 IPR001841 -
Gso11g1166 274 CDD RING-H2_PA-TM-RING 211 253 - -
Gso11g1166 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 259 IPR013083 -
Gso11g1166 274 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1166 Gso-Chr11 10462767 10467574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1166 1 274 C3H Transcription Factor Family AT3G55530 69.314 1.07e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1166 K16283 - gmx:100805406 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1166 11 10462767 10467574 Gso11g1166 11 10462767 10467574 ECH
Gso12g0502 12 4462480 4468429 Gso11g1166 11 10462767 10467574 GST