Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1165 ATGAATTTGGAAACGCAACCAGGAACGGCGTCGTATTGGTGCTACAGCTGCACCCGTTTCGTGCACCTCTCTGTCCAAAGCACCATCGCCTGCCCCCACTGTCAAAGCGGTTTCGTCGAAGAGATCCGTGCCGGCGCCGGAGCCGAAGCCTCGCCACGCCATCGACTAAGTCCTTTCCCCGATGATCCTCTTTTGCTCCGGCGACAGGGCTTCCGCCGCCGTAGGAGAGAAGCTTCCGGCAACCGCTCCCCGTTCAACCCCGTTATCGTCCTCCGCGGCCCCGGCGACGACTCCGCCGCCGCCGACCACGACGGCGTCAGCACGTTCGAGCTCTTCTACGACGACGGCGACGGCACCGGCCTCCGCCCTCTTCCTCCCACCATGTCGGAGTTGCTCCTCGGCTCTGGCTTTGACAGACTTCTCGAACAGTTCGCGCAGATCGAGATGAACGGATTCGGGCGGCCGGAGAATCCGCCGGCGTCAAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGAGAAACGCACGTGGAAACCGAAGCGCACTGCGCCGTGTGCAAAGAAGCGTTTGAGCTGCACGCGGAGGCGCGTGAGTTACCGTGCAAGCACATCTACCACTCCGATTGCATCCTCCCGTGGCTCTCGATGCGGAATTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGTTCCCAGCCAGATCGACGAGGAGACGATAGGGTTAACGATTTGGAGGCTTCCCGGCGGCGGATTCGCCGTGGGGAGATTCTCCGGCGGCCGGAGAACAGGCGAGAGTCATTTCCCGGTGGTGTACACGGAGATGGACGGTGGACTGAACACGAACGGTGGTGCTCCTAGGAGAATTTCTCGTTCTGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGGTTTGGTAGAGTTATTAGCAATTTCTTTTCATTCTTTGGAAGAATTGGTTCTAGAAACTCTTCTTCTGGACATGGGTCTGTAAGTAGAAGCCGTAGTCACGTGAGTTCAATCTTCAATAGAAGCTCGCGGAGACATAGCAGGACTTGGGTTATGGATGATTAA 1086 0.581 MNLETQPGTASYWCYSCTRFVHLSVQSTIACPHCQSGFVEEIRAGAGAEASPRHRLSPFPDDPLLLRRQGFRRRRREASGNRSPFNPVIVLRGPGDDSAAADHDGVSTFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGETHVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEETIGLTIWRLPGGGFAVGRFSGGRRTGESHFPVVYTEMDGGLNTNGGAPRRISRSVRSNRVRESRGFGRVISNFFSFFGRIGSRNSSSGHGSVSRSRSHVSSIFNRSSRRHSRTWVMDD* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1165 361 SMART ring_2 184 224 IPR001841 -
Gso11g1165 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 309 - -
Gso11g1165 361 SUPERFAMILY RING/U-box 164 232 - -
Gso11g1165 361 PANTHER OS05G0110000 PROTEIN 9 309 - -
Gso11g1165 361 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Gso11g1165 361 CDD RING-H2_RNF126_like 184 225 - -
Gso11g1165 361 Pfam Ring finger domain 183 225 IPR001841 -
Gso11g1165 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 231 IPR013083 -
Gso11g1165 361 Pfam Protein of unknown function (DUF1117) 245 351 IPR010543 -
Gso11g1165 361 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1165 Gso-Chr11 10455234 10456717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1165 123 231 C3H Transcription Factor Family AT5G01980 47.706 1.24e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1165 - - gmx:100804867 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1165 11 10455234 10456717 Gso11g1165 11 10455234 10456717 ECH
Gso12g0501 12 4455408 4456932 Gso11g1165 11 10455234 10456717 GST
Gso15g0321 15 2886563 2888141 Gso11g1165 11 10455234 10456717 PCT
Gso11g3486 11 50766906 50768339 Gso11g1165 11 10455234 10456717 PCT
Gso11g1165 11 10455234 10456717 Gso15g0321 15 2886563 2888141 PCT
Gso11g1165 11 10455234 10456717 Gso11g3486 11 50766906 50768339 PCT