Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1159 ATGGGGGAAGAGGTGAAGACGAGCGAGTACGACGAAGAGCGCGTGATGGAGTGGGAGGCGGGTCTCCCAACTGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATCCCGCCGGAACTCGCGTCGGCCTTCAGCATCTTGCCGGAGCCCCACCGCACCCTCCTCGACGTCAACCGCGCCTCTCGCAACACGCTCTCCACGCTCCGCGGCGGCGGAGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACAACCACAACTACGACGGCGACGGCGACGGAGGCGTCGAGGAGGAGGAGGACGACGACGACGATCGCGACGGCTCGGGGCCGGATTCACGGAAGCAGCGGAAGATCGACTGCGGCGCGGCCGAGGAGGCGGACTCGGCGGTTCAGACGGAGACCTCGGCGGAGCGGACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCACAGCTTCACAAGAGGTTCGTTGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTCGCAAGCCATCTCCAGAAGTATCGTCTCTACCTGAAACGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTGCTTCGGATCAGTTATTTGCGTCGACACCTGTGCCTCAGAGCTTGCATGACTCTGCTCCTCCCAGTAACCATAGCAATGGTCATGGTCATGGGCATGGCCATAGCAATGGCCGTGGTCATGGTCATGGTCATGGTCATGGTCATCTCTCTGTTCCGATGATGTCCATGCCATATCCACCTCCCCTGATGTCCATGCCATATCCACCTCCCATGATGTCGGGCATGCCCCATGGCCACATGGGCATCCCCATGCCTAATTCCTCCGCCACCTCAGCTTACCATCCTTATAATATGTTGCATCAAAGGGATTGGCCTCACCTTGCTCCTAATGATAAATGA 972 0.6008 MGEEVKTSEYDEERVMEWEAGLPTANDLTPLSQPLIPPELASAFSILPEPHRTLLDVNRASRNTLSTLRGGGGSVHQAFSSSNNNHNYDGDGDGGVEEEEDDDDDRDGSGPDSRKQRKIDCGAAEEADSAVQTETSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSASDQLFASTPVPQSLHDSAPPSNHSNGHGHGHGHSNGRGHGHGHGHGHLSVPMMSMPYPPPLMSMPYPPPMMSGMPHGHMGIPMPNSSATSAYHPYNMLHQRDWPHLAPNDK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1159 323 MobiDBLite consensus disorder prediction 93 107 - -
Gso11g1159 323 MobiDBLite consensus disorder prediction 1 35 - -
Gso11g1159 323 MobiDBLite consensus disorder prediction 66 140 - -
Gso11g1159 323 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 145 197 IPR006447 GO:0003677
Gso11g1159 323 SUPERFAMILY Homeodomain-like 142 201 IPR009057 -
Gso11g1159 323 MobiDBLite consensus disorder prediction 242 256 - -
Gso11g1159 323 MobiDBLite consensus disorder prediction 108 124 - -
Gso11g1159 323 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 315 - -
Gso11g1159 323 MobiDBLite consensus disorder prediction 66 89 - -
Gso11g1159 323 MobiDBLite consensus disorder prediction 1 18 - -
Gso11g1159 323 MobiDBLite consensus disorder prediction 206 261 - -
Gso11g1159 323 MobiDBLite consensus disorder prediction 206 241 - -
Gso11g1159 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 200 IPR017930 -
Gso11g1159 323 Pfam Myb-like DNA-binding domain 148 196 IPR001005 -
Gso11g1159 323 Gene3D - 140 203 - -
Gso11g1159 323 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 315 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1159 Gso-Chr11 10381605 10384494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1159 1 228 G2-like Transcription Factor Family AT3G46640 62.651 4.43e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso11g1159 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1159 - - gmx:100802217 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1159 11 10381605 10384494 Gso11g1159 11 10381605 10384494 ECH
Gso12g0497 12 4399388 4402150 Gso11g1159 11 10381605 10384494 GST