Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1152 ATGGAATCTGATCTTCATCATGATCATCAAGCTGCAGCATCAGAAAATCATCCCTCTGATGGAGAGGAGCAAGGTGCAAGTCACGTGACATCGAGGTCCTTCGAGTGCAACTTCTGCAGGAGGGGCTTCTCTAATGCACAAGCTCTAGGAGGACACATGAATATTCATAGAAAAGACAAAGCCAAGCTCAAGCAACAACAATCTTCAAACCAAATTCAACAGGATCAGGCCAAGTCTTATGGTGAAGATAGCAACAAACAAAAATGGAATTGGAATGTGTCTCTACAAGAACATGCCATTCACAAGAGGCAGCAGCTTCCACTCTTTGCCGAATCACCAACTAGTAGTGAAACACAAAAGCCACAACAAGGTCAAACTCAAACTACTACTGAACAGGCTTCGTTATCTACTCAAGATTCCTCATCGGAGTTAGACCTTGAACTGAGACTAGGACCTGAACCACAGGACTCGTCAGCAGCAGAAACGGGTACAAGAAATTTTTTTTGA 507 0.4359 MESDLHHDHQAAASENHPSDGEEQGASHVTSRSFECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQIQQDQAKSYGEDSNKQKWNWNVSLQEHAIHKRQQLPLFAESPTSSETQKPQQGQTQTTTEQASLSTQDSSSELDLELRLGPEPQDSSAAETGTRNFF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1152 168 PANTHER OS07G0101800 PROTEIN 1 120 - -
Gso11g1152 168 PANTHER OS07G0101800 PROTEIN 113 159 - -
Gso11g1152 168 MobiDBLite consensus disorder prediction 1 31 - -
Gso11g1152 168 MobiDBLite consensus disorder prediction 49 85 - -
Gso11g1152 168 MobiDBLite consensus disorder prediction 65 85 - -
Gso11g1152 168 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g1152 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 120 - -
Gso11g1152 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 113 159 - -
Gso11g1152 168 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Gso11g1152 168 MobiDBLite consensus disorder prediction 108 144 - -
Gso11g1152 168 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Gso11g1152 168 MobiDBLite consensus disorder prediction 102 168 - -
Gso11g1152 168 Gene3D Classic Zinc Finger 17 94 - -
Gso11g1152 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1152 Gso-Chr11 10341861 10342822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1152 31 154 C2H2 Transcription Factor Family AT3G53820 35.606 1.58e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1152 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1152 - - gmx:102667172 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1152 11 10341861 10342822 Gso11g1152 11 10341861 10342822 ECH
Gso12g0491 12 4357450 4358445 Gso11g1152 11 10341861 10342822 GST