Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1139 ATGGGTGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACCTCAAATCAAACCTTCACAACTTGTCTGATAATGATGATGATGGGAAAAGGAATGAGAAGGATCCTTGTGGAGGGTTCAGTGAGTACAGTTTGGATCAGTTAAGAGTTGCAACCTCAGGATTTTCACCAGACAACATTGTCTCAGAGCATGGAGAGAAGGCTCCAAACGTTGTCTACAGAGGGATGCTTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGATGAAGCACGTGCTGTGGGGCAGCTAAGGAGTGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAAAGGTTGCTTGTGGCAGAGTTCATGCCCAATGAAACTCTCTCCAAACACCTTTTTCATTGGGAATCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCATTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAATAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGGAAGGATCACTGCTGAAAGTGTAGTATACAGTTTTGGCACCCTATTGCTTGATCTGTTGAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACAAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGGACTGAGTTAGTGAGATTAGCATCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGTTAAGTCACTTGTGACTGCTCTAACCCCCCTTCAGAAAGAAACTTCGGTACCATCAAATGTTTTAATGGGCATACCAGATAGGAGTCTATCATCAAAGGAAACAGTTTCATTGACGCCTTTTGGTGATGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAGCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAAAAGCTAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCCACGGCCATTGACTGCTATACACAATTCATCGATGGTGGAACCATGGTATCACCGACTGTGTATGCCAGGCGCTGCTTGTGCTACCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTCCCACTTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGCCTTAAAGATGGCACAACACTGGAAACCAGGAAGTATAGAAATTGA 1479 0.4375 MGARCSKFSLCWWPSHLKSNLHNLSDNDDDGKRNEKDPCGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYRGMLEDDRLVAVKRFNKSAWPDSRQFLDEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWESQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEANPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIQGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSNVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAIHEILENVGYKDDEGVANELSFQMWTNQIQETLNSKKLGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMQAQSISPTWPTAYYLQAAALFSLGMDNDAQESLKDGTTLETRKYRN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1139 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 492 IPR045845 GO:0004672|GO:0009742
Gso11g1139 492 SUPERFAMILY TPR-like 391 482 IPR011990 GO:0005515
Gso11g1139 492 Gene3D Tetratricopeptide repeat domain 385 491 IPR011990 GO:0005515
Gso11g1139 492 SUPERFAMILY Protein kinase-like (PK-like) 41 317 IPR011009 -
Gso11g1139 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1139 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Gso11g1139 492 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Gso11g1139 492 Gene3D Transferase(Phosphotransferase) domain 1 137 329 - -
Gso11g1139 492 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1139 Gso-Chr11 10258080 10262255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1139 41 316 Receptor kinase-like Gene Family AT3G58690 32.890 4.97e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gso11g1139 PK_Tyr_Ser-Thr 6.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1139 - - gmx:732542 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1139 11 10258080 10262255 Gso11g1139 11 10258080 10262255 ECH
Gso12g0480 12 4280218 4284409 Gso11g1139 11 10258080 10262255 GST