Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1136 ATGAGGAAGCCCGAGGTTTCTGGAAAAAACAACAACATTAATAACAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCGGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCACAAGAAGAGGAAATCATCATCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCAGCGCGCTTACCAGGGAGAACTGACAATGAAATTAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACTTGTCCTCCAACACCTCACCAAATGGAAGCGAGTCATCATATGAGCCCAACAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCAACAAAATCAACAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCAATCACCATCCATGCATGCCACTACAGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGAGCATGGACTAAACATGACAAGTTCTGGTGGATTCTTCAACAGCAAAGGGCCATGCTTCTCATCATCACAAAGTGGAGTTGACAACAACAAAGGGTTTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGTGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATTATAACCTGAAATTGGAGAGTACGTGCAACACAGATACTAACAATAGTAATTACTTTGATGACATAAACAGTATCATCCTTAATAACTGCAACATTAATAATAGCAACAATATTAAGAGAGCTGAAAATAGGGCTGGTGGGGTGGAGAATTTGTTTCAAGAAGAGTTAACCATTGGAGAGTGGGACTTAGAGGAGTTGATGAAAGATGTTTCATCCTTTCCGTTTCTTGATTTTTCAAAAATCCAATAA 1023 0.4008 MRKPEVSGKNNNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEIIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSNTSPNGSESSYEPNNKDLNMAGFTTSNTQQNQQHADFMPMFNSSSQSPSMHATTVLNSIIDRLPMLEHGLNMTSSGGFFNSKGPCFSSSQSGVDNNKGFYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHYNLKLESTCNTDTNNSNYFDDINSIILNNCNINNSNNIKRAENRAGGVENLFQEELTIGEWDLEELMKDVSSFPFLDFSKIQ* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1136 340 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gso11g1136 340 CDD SANT 22 66 IPR001005 -
Gso11g1136 340 PANTHER MYB DOMAIN PROTEIN 55 8 337 - -
Gso11g1136 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Gso11g1136 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Gso11g1136 340 SMART sant 71 119 IPR001005 -
Gso11g1136 340 SMART sant 18 68 IPR001005 -
Gso11g1136 340 Gene3D - 74 146 - -
Gso11g1136 340 Gene3D - 16 72 - -
Gso11g1136 340 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Gso11g1136 340 MobiDBLite consensus disorder prediction 123 149 - -
Gso11g1136 340 CDD SANT 74 114 IPR001005 -
Gso11g1136 340 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Gso11g1136 340 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Gso11g1136 340 PANTHER MYB TRANSCRIPTION FACTOR 8 337 - -
Gso11g1136 340 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1136 Gso-Chr11 10235755 10238401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1136 1 336 MYB Transcription Factor Family AT3G08500 42.623 1.36e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g1136 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1136 K09422 - gmx:100785810 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1136 11 10235755 10238401 Gso11g1136 11 10235755 10238401 ECH
Gso12g0478 12 4264209 4267082 Gso11g1136 11 10235755 10238401 GST
Gso15g0306 15 2779033 2782043 Gso11g1136 11 10235755 10238401 PCT
Gso11g3499 11 50856650 50859489 Gso11g1136 11 10235755 10238401 PCT
Gso11g1136 11 10235755 10238401 Gso15g0306 15 2779033 2782043 PCT
Gso11g1136 11 10235755 10238401 Gso11g3499 11 50856650 50859489 PCT