Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1131 ATGGTGGCGACGGCGATCGAGGAAGTGCGAACCCTCTGGATTGGCGATTTACAGTACTGGGTGGACGAGTCCTATCTCTCTCAGTGCTTCGCCCACAACGGCGAAGTGGTTTCCATTAAAATCATCCGCAACAAGCTAACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCGCACGCCTCGGCCGAAGCCTTTCTCCGAACCTACAATGGAGCCCAAATGCCCGGCACGGAGCAGACCTTCAGGCTCAATTGGGCCTCGTTCGGGGACTCCGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTTCTCCTCCAGGAAACCTTTCGGGCCCATTATCCGTCCGTTAAAGGGGCCAAAGTCGTCACCGACCCCGCCACTGGCCGCTCCAAGGGCTATGGGTTCGTTAAGTTCGCCGATGAGGCCCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGCCCAATGCGTATTAGTGCTGCCACACCTAAGAAGAACGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACAGTGCTCCAGTGAGTGCTGTTGCGCCGGAGAATGATGTGAATAATACCACTGTAAGTTGGGTTTGTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTTAAGCAAACCTTTATGCAATTTGGAGATATTGTGTTGGTGAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGTGTCTGCTGAAGATGCCATTCAGAGAATGCAAGGGAAGGTAATAGGTCAACAAGTTATCCAAATTTCTTGGGGCAGCTCCATGACAGCTAGACAGGATGTGCCCGGTGGCTGGGGTGTACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGATATGGACAGGGTTATGAAGCATATGCTTATGGTGCTACTCAAGATCCCTCCATTTATACTTATGGTGCATATGCTGGTTATGCACAATACCCTCAACAGGTTGAAGGTGCTCAAGACATGTCAGTAGTGTCTATGCCTATGGAGGAATTGTATGATCCCCTGGCAATGCCTGATGTCGATAAATTAAATGCTGCATATCTTTCAATACATGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCACAATCTTTACAGCAAGCCTAG 1215 0.5004 MVATAIEEVRTLWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTYNGAQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYSAPVSAVAPENDVNNTTVSWVCIGNLDLNVTEEELKQTFMQFGDIVLVKIYAGKGYGYVQFGTRVSAEDAIQRMQGKVIGQQVIQISWGSSMTARQDVPGGWGVQMDPSQWSAYYGYGQGYEAYAYGATQDPSIYTYGAYAGYAQYPQQVEGAQDMSVVSMPMEELYDPLAMPDVDKLNAAYLSIHGSSILGRSLWQRTSQSLQQA* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1131 404 CDD RRM1_SECp43_like 11 91 - -
Gso11g1131 404 Gene3D - 203 295 IPR012677 -
Gso11g1131 404 SUPERFAMILY RNA-binding domain, RBD 94 185 IPR035979 GO:0003676
Gso11g1131 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 282 IPR000504 GO:0003723
Gso11g1131 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Gso11g1131 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Gso11g1131 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
Gso11g1131 404 SUPERFAMILY RNA-binding domain, RBD 6 78 IPR035979 GO:0003676
Gso11g1131 404 CDD RRM2_SECp43_like 96 175 - -
Gso11g1131 404 Gene3D - 9 89 IPR012677 -
Gso11g1131 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 347 - -
Gso11g1131 404 Gene3D - 90 185 IPR012677 -
Gso11g1131 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Gso11g1131 404 SUPERFAMILY RNA-binding domain, RBD 210 317 IPR035979 GO:0003676
Gso11g1131 404 SMART rrm1_1 11 86 IPR000504 GO:0003723
Gso11g1131 404 SMART rrm1_1 218 285 IPR000504 GO:0003723
Gso11g1131 404 SMART rrm1_1 98 172 IPR000504 GO:0003723
Gso11g1131 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 289 IPR000504 GO:0003723
Gso11g1131 404 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 4 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1131 Gso-Chr11 10197931 10201564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1131 11 295 Eukaryotic Initiation Factors Gene Family AT1G71770 24.915 2.13e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1131 - - gmx:100794427 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1131 11 10197931 10201564 Gso11g1131 11 10197931 10201564 ECH
Gso12g0474 12 4228383 4231828 Gso11g1131 11 10197931 10201564 GST
Gso15g0303 15 2752536 2754725 Gso11g1131 11 10197931 10201564 PCT
Gso11g3502 11 50884915 50887763 Gso11g1131 11 10197931 10201564 PCT
Gso11g1131 11 10197931 10201564 Gso15g0303 15 2752536 2754725 PCT
Gso11g1131 11 10197931 10201564 Gso11g3502 11 50884915 50887763 PCT