Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1127 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATACCATTAGTTATCCCTATAATACAGCAGGAAGCTTTATTGAATATTTTGAAGGTCTCACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCTTACCCTTCAAATTCAAGCTTTTACAAGTTTGGACTATCTGAACCAGAGAATAATTCATACTATCGTTATAGTCATGGTTATGAGGTAAATCATCATGAACCACTGGTGGATGAGTACAGGAGACCTTCAGAGAACTCATTGACAATCAATGAACAGTCACCAGCAGTAAGCACAGAATGGGTTGAAGGTGGAAACACTGACACACAAGACAATTCTATTGAATGTCCTCGAAGACATCATAGTAATTCAAATGATTATCAGGTTATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTGGGTGAAGCTGTTGGAACTCAAAGCCGTGGTCTTACCCAAGAACAGATCTCCTCGCTTCCAGTGTCAAAGTACAAATGTGGGTTCTTCTTGAGGAAGAAGTCACGAGATGAGAGATGTGTGATTTGCCAGATGGAATATAGAAGAGGGGACAAGCGTATCACCTTACCATGTAAACATGTTTATCATGCTAGTTGTGGGAACAAGTGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAACACAAATAA 747 0.4016 MSWNPHMEVHYNTISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGLSEPENNSYYRYSHGYEVNHHEPLVDEYRRPSENSLTINEQSPAVSTEWVEGGNTDTQDNSIECPRRHHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLRKKSRDERCVICQMEYRRGDKRITLPCKHVYHASCGNKWLSINKACPICYTEVFADKSKHK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1127 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Gso11g1127 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Gso11g1127 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Gso11g1127 248 SMART ring_2 196 236 IPR001841 -
Gso11g1127 248 MobiDBLite consensus disorder prediction 97 121 - -
Gso11g1127 248 Pfam Ring finger domain 195 236 IPR001841 -
Gso11g1127 248 SUPERFAMILY RING/U-box 190 243 - -
Gso11g1127 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Gso11g1127 248 MobiDBLite consensus disorder prediction 97 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1127 Gso-Chr11 10174330 10179206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1127 5 247 C3H Transcription Factor Family AT3G63530 42.972 1.50e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1127 K19045 - gmx:100793907 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1127 11 10174330 10179206 Gso11g1127 11 10174330 10179206 ECH
Gso12g0472 12 4209918 4214853 Gso11g1127 11 10174330 10179206 GST