Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1126 ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTCCTTCTCCTTCCATCAATCCACCATTCTATTTTCCTTCAAATTATCATAATAATAACTACACAAGTGTCATATCTTCTACTCGTCATCAGTTCCAACCCTCTCCTCCTCCTGAAGGAAAAGCCCTTCCCCTCCTTCATCCAAGACATGAAGTAGAAGAAGAAGATCTTGAATCTTCATTCAGTGCCATGGAAGTGGACAAGAAAAAGAAAGAGCTGAGTTCATCATCTAGCTGCTTGGATGAAGAAGATGCTGCAGTGACTGTGGCCTTACACTTAGGGCTTCCAAGCACGAGTGATTTAGCTTCTTCAAGCCTATACTCATCAACAGAGGCCTCTTCAGACAAAGAAGAAGAAGAAGAAGAAGTAGTACTCACTGATTCTTCGGGGCTTCTTCTGTCAAATAGAATTAACAGAGGACAATATTGGATCCCTACTTCCTCACAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCAATGCTAAGACTCCCTTGCTATTGCTGTGCACCTGGATGCAAGAACAACATAGACCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACTCACTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGAACTCACGAAAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGATCTGATTTTAAACACAAAAGATCTCTTAAGGATCATATCAAGGCATTTGGATATGGTCACACGGCTTGTGGAAATGATCGCTGCAACCTTGATCAAGATCATGATGATCAATTAGTGGGCTCTGAAATTGAATAA 1026 0.4279 MTNSYTSNDLNFWLDLNSPCLLSSPSPSPSINPPFYFPSNYHNNNYTSVISSTRHQFQPSPPPEGKALPLLHPRHEVEEEDLESSFSAMEVDKKKKELSSSSSCLDEEDAAVTVALHLGLPSTSDLASSSLYSSTEASSDKEEEEEEVVLTDSSGLLLSNRINRGQYWIPTSSQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTACGNDRCNLDQDHDDQLVGSEIE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1126 341 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Gso11g1126 341 Gene3D Classic Zinc Finger 181 204 - -
Gso11g1126 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Gso11g1126 341 MobiDBLite consensus disorder prediction 125 147 - -
Gso11g1126 341 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 329 - -
Gso11g1126 341 Gene3D Classic Zinc Finger 243 324 - -
Gso11g1126 341 PANTHER ZINC FINGER PROTEIN WIP2 6 329 IPR043584 GO:0003700|GO:0010468
Gso11g1126 341 SUPERFAMILY beta-beta-alpha zinc fingers 248 286 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1126 Gso-Chr11 10163856 10166583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1126 1 341 C2H2 Transcription Factor Family AT1G51220 56.980 5.45e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1126 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1126 - - gmx:100783143 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0471 12 4199861 4202730 Gso11g1126 11 10163856 10166583 GST
Gso15g0297 15 2698493 2701059 Gso11g1126 11 10163856 10166583 PCT
Gso11g3507 11 50937897 50940323 Gso11g1126 11 10163856 10166583 PCT
Gso11g1126 11 10163856 10166583 Gso15g0297 15 2698493 2701059 PCT
Gso11g1126 11 10163856 10166583 Gso11g3507 11 50937897 50940323 PCT