Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1122 ATGAACAACAACTGGCTTTCGTTCCCTCTTTCTCCTACTCATTCTTCCTTACCAGCTCATGATCTTCAAGCAACTCAATATCATCAATTTTCTCTTGGGTTAGTGAACGAGAACATGGAAAACCCTTTCCAAAATCATGATTGGAGTCTTATTAACACTCATAGTAGCAGCGAAGTTCCAAAAGTTGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATGAGTCAGACCTTGCTGCCAGCTTGAACGAAATTCAGTCAAATGATTCAGATTATCTATTCACAAACAACAGTCTGGTGCCTATGCAAAACCCTGCGGTGGACACACCTAGCAATGAGTATCAAGAAAATGCTAATAGTAGTTTGCAATCATTGACATTGTCCATGGGAAGTGGTAAGGATTCAACATGCGAAACCAGTGGTGATAATAGCACAAACACTACTACTACTACTACTGTTGAAGCTGCACCTAGAAGAACATTGGATACATTCGGGCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCAATTAGTAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGCGACAAGAATTTGTTGCTGCCATTAGAAGGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGCTACGACGTGAAAGCCATCCTTGAAAGCAACACTCTCCCAATAGGAGGAGGAGCTGCAAAGCGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCGAGAAAGCGCGAAGAGATGATTGCACTAGGATCATCCACATTCCAATATGGAACCACAAGCTCTAATTCTAGGCTACATGCTTACCCTCTAATGCAGCACCACCACCAGTTTGAACAACCTCAACCTCTGCTAACTTTGCAAAACCATGATATCAGTTCTCACTTCTCTCACCAGCAAGACCCTTTGCATCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGCAGAGTGGTGGTTCTTCTTCTTATAGCTTTCAGAATAATAATATAAATAATGCTCAGTTCTATAATGGTTATAATCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATTAACATGGGGTCTTCATCTTCTTCATCTGTGTTGGAGAATAATAATAGTAACAATAATAATGTTGGTGGGTTTGTGGGAAGTGGGTTTGGTATGGCTTCTAATGCAACGTCGGGGAACACGGTGGGGACGGCGGAGGAGCTAGGGCTGGTGAAGGTGGACTATGACATGCCGACTGGTGGTTACGGTGGATGGTCGGCGGCGGCGGCGGCGGAGTCCATGCAGACGTCGAATAGTGGGGTGTTCACAATGTGGAATGACTGA 1689 0.4411 MNNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMENPFQNHDWSLINTHSSSEVPKVADFLGVSKSENESDLAASLNEIQSNDSDYLFTNNSLVPMQNPAVDTPSNEYQENANSSLQSLTLSMGSGKDSTCETSGDNSTNTTTTTTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARSYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTTSSNSRLHAYPLMQHHHQFEQPQPLLTLQNHDISSHFSHQQDPLHQGYIQTQLQLHQQQSGGSSSYSFQNNNINNAQFYNGYNLQNHPALLQGMINMGSSSSSSVLENNNSNNNNVGGFVGSGFGMASNATSGNTVGTAEELGLVKVDYDMPTGGYGGWSAAAAAESMQTSNSGVFTMWND* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1122 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 561 - -
Gso11g1122 562 CDD AP2 168 237 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 SUPERFAMILY DNA-binding domain 168 237 IPR016177 GO:0003677
Gso11g1122 562 Gene3D AP2/ERF domain 169 237 IPR036955 GO:0003700|GO:0006355
Gso11g1122 562 Gene3D AP2/ERF domain 271 331 IPR036955 GO:0003700|GO:0006355
Gso11g1122 562 ProSiteProfiles AP2/ERF domain profile. 169 235 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 Pfam AP2 domain 272 321 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 Pfam AP2 domain 169 227 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 PRINTS Ethylene responsive element binding protein signature 311 331 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 ProSiteProfiles AP2/ERF domain profile. 271 329 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 MobiDBLite consensus disorder prediction 126 151 - -
Gso11g1122 562 SUPERFAMILY DNA-binding domain 270 331 IPR016177 GO:0003677
Gso11g1122 562 SMART rav1_2 169 241 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 SMART rav1_2 271 335 IPR001471 GO:0003700|GO:0006355
Gso11g1122 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 561 - -
Gso11g1122 562 CDD AP2 270 331 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1122 Gso-Chr11 10123667 10127243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1122 3 562 AP2-EREBP Transcription Factor Family AT1G51190 63.105 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso11g1122 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1122 K09285 - gmx:100170752 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1122 11 10123667 10127243 Gso11g1122 11 10123667 10127243 ECH
Gso12g0467 12 4151855 4155288 Gso11g1122 11 10123667 10127243 GST