Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1121 ATGGATTCAGCAACAACAGCTCCTCCCCCATCGCAGGAGCTGGACTTGGACAACCTCAAACTCCTCAAAGTCCTAGGAAAAGGCGCCATGGGAACTGTCTTCCTCGTACAAGACACAACCAACACCCCCTTCGCCCTCAAAGTGGTGGACAAAACGTGCGTCCACGCGAAGCTCGACGCGGAACGGCGCGCGCGTTGGGAAATCCAAGTCCTCTCAACGCTCTCCCACCCTTTCCTCCCTTCCCTCATGGGAACGTTGGAGTCCCCACAGTTCCTGGCGTGGGCCCTACCCTACTGCCCCGGCGGCGACCTCAACTTCCTCCGCTACCGCCAAACCGACCGCTCCTTCTCCCCCGCCGTCATCCGCTTCTACGTCGCCGAAATTCTCTGCGCTCTCGACCACCTCCATTCCATGGGCATCGCCTACCGCGACCTAAAACCCGAAAATGTCCTCGTCCAAAACACCGGCCACGTCACCCTCACCGATTTCGACCTCTCCCGAAAGCTCAATCCCAAACCTAAACCTAATCCTAACCCTGTCATCGTTCCTTCAATCCCCTTGCCAAATTCCAACGTTCCCCAACCTCGCCGCAAGCACCGCCGGAATTTATCCCGGTGGATCTCCTTCTTCCCGCCGGACGGGACTAACAACAACAACAAAAACGGTCTCAAGAAGGCCAAGTCCGCGCAAGTCAGCCCGGTGAGTCGGAGAAAACCGAGTTTCTCCAGCGGCGAACGATCCAACTCGTTCGTCGGCACTGAAGAATACGTCTCGCCAGAGGTCGTCCGAGGCGACGGACATGAGTTCGCCGTCGATTGGTGGGCGCTTGGAATACTAATCTACGAAATGCTCTACGGTAAGACGCCGTTCAAGGGAAGGAATCGTAAGGAAACGTTTCGGAACGTTATCATGAAGCCGCCGGAGTTCGTCGGAAAACGAACGGCGTTAACCAACCTTATTGAAAGGTTGTTGGAGAAGGATCCGACGAAGCGTTTGGGTTACACGCGCGGTGCCGCGGAGATCAAGGAGCACGAGTTTTTCCGAGGGGTTCAGTGGGAGCTTTTGACGGAGGTGGTGCGGCCGCCGTTCATACCGTCGGGGGACGACGGCGCCGGAGAGATGACGGAGAGGTTCTCCGATCGAAATTGTGGCGTCAATATTAGGGATTACTTTCAGAATCTTAAATCGTCGCCGTCGGGCAGGTTTGAGAAGAATGTTTCGCTAAGGGAATTCTAA 1236 0.5607 MDSATTAPPPSQELDLDNLKLLKVLGKGAMGTVFLVQDTTNTPFALKVVDKTCVHAKLDAERRARWEIQVLSTLSHPFLPSLMGTLESPQFLAWALPYCPGGDLNFLRYRQTDRSFSPAVIRFYVAEILCALDHLHSMGIAYRDLKPENVLVQNTGHVTLTDFDLSRKLNPKPKPNPNPVIVPSIPLPNSNVPQPRRKHRRNLSRWISFFPPDGTNNNNKNGLKKAKSAQVSPVSRRKPSFSSGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILIYEMLYGKTPFKGRNRKETFRNVIMKPPEFVGKRTALTNLIERLLEKDPTKRLGYTRGAAEIKEHEFFRGVQWELLTEVVRPPFIPSGDDGAGEMTERFSDRNCGVNIRDYFQNLKSSPSGRFEKNVSLREF* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1121 411 Gene3D Transferase(Phosphotransferase) domain 1 244 366 - -
Gso11g1121 411 ProSiteProfiles Protein kinase domain profile. 19 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1121 411 MobiDBLite consensus disorder prediction 166 248 - -
Gso11g1121 411 Pfam Protein kinase domain 242 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1121 411 Pfam Protein kinase domain 21 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1121 411 Gene3D Phosphorylase Kinase; domain 1 18 102 - -
Gso11g1121 411 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 14 398 - -
Gso11g1121 411 ProSiteProfiles AGC-kinase C-terminal domain profile. 348 411 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso11g1121 411 Gene3D Transferase(Phosphotransferase) domain 1 103 171 - -
Gso11g1121 411 MobiDBLite consensus disorder prediction 209 248 - -
Gso11g1121 411 MobiDBLite consensus disorder prediction 172 190 - -
Gso11g1121 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Gso11g1121 411 SMART serkin_6 19 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1121 411 SUPERFAMILY Protein kinase-like (PK-like) 16 366 IPR011009 -
Gso11g1121 411 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Gso11g1121 411 PANTHER FLIPPASE KINASE 1-RELATED 14 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1121 Gso-Chr11 10098027 10099475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1121 14 399 AGC Kinase Gene Family AT3G20830 59.148 5.30e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso11g1121 Pkinase 4.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1121 - K08286 gmx:100782070 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1121 11 10098027 10099475 Gso11g1121 11 10098027 10099475 ECH
Gso12g0466 12 4121204 4122712 Gso11g1121 11 10098027 10099475 GST
Gso11g3513 11 50975105 50976763 Gso11g1121 11 10098027 10099475 PCT
Gso11g1121 11 10098027 10099475 Gso11g3513 11 50975105 50976763 PCT