Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1117 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCACCAGCAGCAGATGAATTCAGGGTTGACACGTTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCATGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAGCGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGTGATGCTGATGCAGAGGATTCACTTGCTACTACTCAGAATCCCCCAACTGTTGTTGCGGTTAAGGAAGAGGTTAATCAGCAACCTCCGGATGTTACATCCATGAATAATGAACCACTTGTTCTCCAACAACAACAGCAGCAGCAGCAACAACAACAACAAAGTAATAATATGTATAATTATGGCTCTTCTGGTACTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAAACCAGATGAAGACTGGTCATGGAAGTAGTTCTAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGATATTACTGGCTATGCTGCTGTTGTAAGGGGCATGGGAACTATGGGAGCTGCTGCTAATAACACCAGCGAGGAAGCAAACTTTTCACCAGCAACAAGGATGAAGAATAATGCACCAAACTTCTCTTCAGGACTAATGTCATCAAGGGCTGAAGTTGGAAACAAGAGCAATACACAGAACAATAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGCAATGAGTTTATCCCTGCAGGTTTCCCCGTTGGTCCGTGGAATGATTCTGCAATCATGTCTGACAACGTGACAGGTCTGAAGAGATTTAGAGATGAAGATGTGAAACCATTTTCTGGTGGTTTAAATGCACCTGAAAGTCAGAATGAAACTGGAGGCCAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTGCAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAACGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTCGTTCCCAACATGGATAAGCAAACAAACACAGCTGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTCAGACTCTTTCGGACAATCGGGCAAAGTGTACGTGTTCACACAAGAAGCAGCAATAA 1257 0.4415 MESDLQQHPPMFLDHHQQQMNSGLTRYRSAPSSYFSSIIDHEFYEHVFNRPSSPETERMLTRFVNSLGGGDADAEDSLATTQNPPTVVAVKEEVNQQPPDVTSMNNEPLVLQQQQQQQQQQQQSNNMYNYGSSGTQNFYQSTGRPPLPNQMKTGHGSSSNLIRHGSSPAGLFSNINIDITGYAAVVRGMGTMGAAANNTSEEANFSPATRMKNNAPNFSSGLMSSRAEVGNKSNTQNNNAENEGFAESQGNEFIPAGFPVGPWNDSAIMSDNVTGLKRFRDEDVKPFSGGLNAPESQNETGGQQPSSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVQTLSDNRAKCTCSHKKQQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1117 418 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Gso11g1117 418 MobiDBLite consensus disorder prediction 203 246 - -
Gso11g1117 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 408 IPR036638 GO:0046983
Gso11g1117 418 SMART finulus 352 402 IPR011598 GO:0046983
Gso11g1117 418 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 415 - -
Gso11g1117 418 MobiDBLite consensus disorder prediction 284 311 - -
Gso11g1117 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983
Gso11g1117 418 Gene3D - 347 418 IPR036638 GO:0046983
Gso11g1117 418 Coils Coil 386 406 - -
Gso11g1117 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 415 - -
Gso11g1117 418 MobiDBLite consensus disorder prediction 291 311 - -
Gso11g1117 418 MobiDBLite consensus disorder prediction 109 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1117 Gso-Chr11 10025398 10030320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1117 1 413 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.981 4.27e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g1117 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1117 - - gmx:100789855 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1117 11 10025398 10030320 Gso11g1117 11 10025398 10030320 ECH
Gso3g1198 3 37652011 37655674 Gso11g1117 11 10025398 10030320 ECH
Gso12g0461 12 4064107 4069057 Gso11g1117 11 10025398 10030320 GST