Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1112 ATGTTGACGAACTCCGCATCCGGCGGTGACGCTCCTTCTCGCGGTTTTGATACGCCGACGCTGGACCTTGAATCGGCGGCGCTGCTCCACGCGATCTCCGAGCATGGCGGGTACGCGTACGTGAGCATGGCGGCTCTGGCGGCAAACGGCGACATTCGCGCGGCGGAGGCGGCGTGCGAGATGGCGTGGGAGCAGCTGCACTCGGGGCCGTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCTTACTCCATGGCGTGCCTCCTCGTGGCGCGCCACCACTACCGCAACGGCGAGTTCAGGGACGCGCTTAGGGTTTTGGATTTGGGAATCATCATGGGAGGCACGCTCCTCCGCAAGGATTTGGACTCCGCCATCGAGAAAATTTCCGAACAAACGAGGAAGACCGTTAGGGTTTCTGATTTGGGGAACTCCGAGCACCGACTCGTCGATCGCGAATTTGATATGGCAGAGGTGCTCCAACTTTTACCTGTGAAGTCTCTTTCAAATAAGCTTGTGGCGAAGAAATCGGCACTGTCGCTGGAGAAATTCCTGAAGGATCATTACCTGTCTGGCTGCCCGGTTATTATCAGTGATTGTATGGCTCACTGGCCAGCCAAGATGAAATGGAATGACGAAGATTACTTACTGAGAGTTGCCGGTGACCGCACGGTTCCGGTTGAGCTTTCATTCCAGGTTGGGAAAAACTATTTATGTACTGAGTGGAAGCAAGAGCTAATTACATTTTCAGAGTTTCTTCAGCGGATAAAGTCCGATAGCTGTTCTCCTGGTGGTCTTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTACTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTGACACCGTTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGAAAGAAATACATTAGGCTTTACTCTTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCCACAATTCCAGCCAGGTTGATTTAGATGACATAGATGAAAACAAGTTTCCGAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGCTCTTTGACTACCAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCGGATGCATCCTAA 1254 0.5048 MLTNSASGGDAPSRGFDTPTLDLESAALLHAISEHGGYAYVSMAALAANGDIRAAEAACEMAWEQLHSGPWHSVLPVWRDAYSMACLLVARHHYRNGEFRDALRVLDLGIIMGGTLLRKDLDSAIEKISEQTRKTVRVSDLGNSEHRLVDREFDMAEVLQLLPVKSLSNKLVAKKSALSLEKFLKDHYLSGCPVIISDCMAHWPAKMKWNDEDYLLRVAGDRTVPVELSFQVGKNYLCTEWKQELITFSEFLQRIKSDSCSPGGLTYLAQHPLFDQINELRKDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLHNSSQVDLDDIDENKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGESSDAS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1112 417 Pfam Cupin-like domain 182 410 IPR041667 -
Gso11g1112 417 PANTHER - 36 410 - -
Gso11g1112 417 SUPERFAMILY Clavaminate synthase-like 176 409 - -
Gso11g1112 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 36 410 - -
Gso11g1112 417 Gene3D Cupin 171 409 - -
Gso11g1112 417 ProSiteProfiles JmjC domain profile. 260 417 IPR003347 -
Gso11g1112 417 SMART cupin_9 266 416 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1112 Gso-Chr11 9980158 9984161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1112 166 408 Acyl Lipid Metabolism Gene Families AT3G45880 24.662 1.18e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso11g1112 Cupin_8 2.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1112 K24444 - gmx:100779376 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1112 11 9980158 9984161 Gso11g1112 11 9980158 9984161 ECH
Gso12g0457 12 4025883 4029912 Gso11g1112 11 9980158 9984161 GST