Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1099 ATGGAGTCAGAGGATGATATGCACGACGCCAACGACATCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCTTTGGACTACTACAGCGACGACGACGCCGACGATTACTTCGACGACGCCGAGAGGATCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCCGATATCCGACTAAGACAGGAAGATGACGTCGCTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTTCTGCAAGCTTACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCATGATACATGGTTTGCTGATGAAGAACGAGTTCGAAAAGCAGTTGGCTTGTTGGAGAAGCCAATTGTCCAGCATCCTAATGCTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCGGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTATTGGTCAAGATATGATTAATCTTTTAGTGTCTGATGAAGATAAGCAGAAATATGCACGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGCTGGAAATTATGATGTCTCTTGCTTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCTGAGTCTGAAAACATGAATTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCGCCCTGTAAATTTGAATTTTGCTGGCTATGTGTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCTCAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTTTATTTGCCGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCGGAAAAGGAACTACAGCCGTTCCTAAGTGCTGATGATCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGAAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGTAGCAGTAAGGGTAGAGCTGGAAGAGGAAAGGGAACTTTTCGAACTAGCTTGTCCAGCAAATTGAATGATGATAGTCATTGGTATTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCCTCCACATGCCAGATGTGCTATCAACAACGTCGATGA 1761 0.4401 MESEDDMHDANDIESLDDDFYSGETEDAPLDYYSDDDADDYFDDAERIESRRPEQNFTILKESDIRLRQEDDVARVATVLSISRVSASLLLRHHNWSVSRVHDTWFADEERVRKAVGLLEKPIVQHPNARELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAIGQDMINLLVSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSAGNYDVSCFCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAAFSKATSSKNAAGSSKGRAGRGKGTFRTSLSSKLNDDSHWYCEHCTYANVKSASTCQMCYQQRR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1099 586 ProSiteProfiles Zinc finger RanBP2 type profile. 558 586 IPR001876 -
Gso11g1099 586 SUPERFAMILY Ran binding protein zinc finger-like 558 585 IPR036443 -
Gso11g1099 586 SUPERFAMILY RING/U-box 285 333 - -
Gso11g1099 586 ProSitePatterns Zinc finger RanBP2-type signature. 562 581 IPR001876 -
Gso11g1099 586 SMART ibrneu5 270 340 IPR002867 -
Gso11g1099 586 SMART ibrneu5 203 266 IPR002867 -
Gso11g1099 586 CDD RING-HC_RBR_TRIAD1_like 134 184 - -
Gso11g1099 586 Gene3D - 556 586 - -
Gso11g1099 586 ProSiteProfiles TRIAD supradomain profile. 130 344 IPR044066 -
Gso11g1099 586 ProSiteProfiles Zinc finger RING-type profile. 134 178 IPR001841 -
Gso11g1099 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 534 IPR031127 GO:0004842|GO:0016567
Gso11g1099 586 Pfam Ariadne domain 353 514 IPR045840 -
Gso11g1099 586 SMART zf_4 560 584 IPR001876 -
Gso11g1099 586 Gene3D - 262 517 - -
Gso11g1099 586 SUPERFAMILY RING/U-box 130 215 - -
Gso11g1099 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 214 IPR013083 -
Gso11g1099 586 MobiDBLite consensus disorder prediction 528 549 - -
Gso11g1099 586 Pfam IBR domain, a half RING-finger domain 283 331 IPR002867 -
Gso11g1099 586 Pfam IBR domain, a half RING-finger domain 203 266 IPR002867 -
Gso11g1099 586 SUPERFAMILY RING/U-box 204 273 - -
Gso11g1099 586 MobiDBLite consensus disorder prediction 1 39 - -
Gso11g1099 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1099 Gso-Chr11 9813798 9821316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1099 17 585 ARIADNE family AT1G65430 69.775 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1099 K11968 - gmx:100784195 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1099 11 9813798 9821316 Gso11g1099 11 9813798 9821316 ECH
Gso15g0276 15 2511087 2517827 Gso11g1099 11 9813798 9821316 PCT
Gso11g3531 11 51131094 51138830 Gso11g1099 11 9813798 9821316 PCT
Gso11g1099 11 9813798 9821316 Gso15g0276 15 2511087 2517827 PCT
Gso11g1099 11 9813798 9821316 Gso11g3531 11 51131094 51138830 PCT