Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1098 ATGGGAAGCTGCATATCAACGCAAGCCGTGAGGACACGCAAGAGGTCGAGGAGCCCGAATCACAAGCCCTCCACGCCAAGAGGGCGCGGGCATGAGGTGGCACGAAGGTCGAGCGTGGCGGCGCGTAGGTCGAGCGTGACGGCGCGTCCGCTGAACGTGGTGTCGGGGCCGAGTCCTGGGAATATATTTGACAAGTACCAGTTCGGGAAGGAGCTGGGGCGTGGCGAGTTCGGTGTAACGCACCGTGTCGTCGATGTCGAGAGTGGCGAGGCGTTTGCGTGCAAGAAGATATCGAAGACGAAGCTGAGGACGGAGATTGACGTGCAGGACGTGAGGAGAGAGGTACAGATCATGAGGCACTTGCCTCAGCACCCTAACATTGTTGCATTCAAGGAGGCTTATGAGGACAAAGACGCTGTTTACCTTGTCATGGAGTTGTGTGAAGGTGGTGAATTATTTGATAGGATTGTTGCTAAGGGACATTACACCGAACGTGCTGCTGCTAATGTTGTCAAAACCATACTTGAAGTTTGCAAGGTGTGTCATGAGCACGGAGTTATACACAGGGACTTGAAACCTGAAAATTTCTTATTTGCAGATACAAGCGAGAGTGCTCCATTGAAGTCAATTGATTTTGGCCTTTCCACCTTCTATGAGTCCGGAGAAAGATTCAGTGAAATTGTTGGAAGTCCTTATTACATGGCTCCAGAGGTTTTAAGACGTAACTATGGACAAGAAATTGATGTTTGGAGCACAGGAGTTATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCCGAGGAAGGGATTGCACAAGCCATCATCAGGGGCAAAGTAGATTTCACAAGAGATCCGTGGCCTAAAGTTTCTGATGAAGCAAAACATCTAGTTAAGCGCATGCTTGATCCAAATCCATTCACCCGGATAACAGTTCAAGAAGTTCTTGATAATTCCTGGATACAAAATAGGGAGCATGGTCGAACTATTTCTCTTGGAGATCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGGAAGGTTCTTAGAGTGGTGGCCGATAACCTGTCAGATGAGCAAATTGATGTGTTTAAGCAAATGTTCAATATGATGGATAAGGACAAGAATGGAAACTTGTCATTTGAAGAGCTCAGAGATGGCCTTTCAATGATTGGACACGCCATTCCTGATCCTGATGTTGAAATGTTAATGGATGCTGCAGATATTGATGGAAACGGCACCCTCAATTATGAGGAGTTCATCACAATGAGTGTTCATCTGAGAAAGATAGAGAGTGATGAGCATCTCTCTGAAGCGTTCCGTTACTTTGACAAGAACCAGAGTGGATATGTTGAGTTTGAGGAGTTGAAAGATGCACTATCAGATGATGACTCGGAAGCCAGTGACGACCAAGTGGTCAAAGACATTCTAAACGATGTTGATTTGGATAAGGATGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAATACAGGAGGAGATTGGAAAATGGCCTCTCGCCAGTATTCAAGAGCATTGTTGAATGCATTAAGCTTCAAAATGTTCAAAGACACATCTAGCAATTCTGTTAAGTGTAACTAA 1629 0.453 MGSCISTQAVRTRKRSRSPNHKPSTPRGRGHEVARRSSVAARRSSVTARPLNVVSGPSPGNIFDKYQFGKELGRGEFGVTHRVVDVESGEAFACKKISKTKLRTEIDVQDVRREVQIMRHLPQHPNIVAFKEAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVVKTILEVCKVCHEHGVIHRDLKPENFLFADTSESAPLKSIDFGLSTFYESGERFSEIVGSPYYMAPEVLRRNYGQEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIRGKVDFTRDPWPKVSDEAKHLVKRMLDPNPFTRITVQEVLDNSWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQIDVFKQMFNMMDKDKNGNLSFEELRDGLSMIGHAIPDPDVEMLMDAADIDGNGTLNYEEFITMSVHLRKIESDEHLSEAFRYFDKNQSGYVEFEELKDALSDDDSEASDDQVVKDILNDVDLDKDGRISFEEFKAMMNTGGDWKMASRQYSRALLNALSFKMFKDTSSNSVKCN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1098 542 SUPERFAMILY EF-hand 363 505 IPR011992 -
Gso11g1098 542 SMART efh_1 371 399 IPR002048 GO:0005509
Gso11g1098 542 SMART efh_1 407 435 IPR002048 GO:0005509
Gso11g1098 542 SMART efh_1 443 471 IPR002048 GO:0005509
Gso11g1098 542 SMART efh_1 480 508 IPR002048 GO:0005509
Gso11g1098 542 Gene3D Transferase(Phosphotransferase) domain 1 152 332 - -
Gso11g1098 542 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Gso11g1098 542 SMART serkin_6 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1098 542 Pfam EF-hand domain pair 442 505 IPR002048 GO:0005509
Gso11g1098 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gso11g1098 542 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Gso11g1098 542 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Gso11g1098 542 CDD EFh 443 505 IPR002048 GO:0005509
Gso11g1098 542 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Gso11g1098 542 ProSiteProfiles Protein kinase domain profile. 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1098 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 521 - -
Gso11g1098 542 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Gso11g1098 542 MobiDBLite consensus disorder prediction 40 54 - -
Gso11g1098 542 CDD EFh 372 431 IPR002048 GO:0005509
Gso11g1098 542 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Gso11g1098 542 Pfam Protein kinase domain 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1098 542 CDD STKc_CAMK 65 323 - -
Gso11g1098 542 SUPERFAMILY Protein kinase-like (PK-like) 49 332 IPR011009 -
Gso11g1098 542 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 44 521 - -
Gso11g1098 542 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Gso11g1098 542 Pfam EF-hand domain pair 384 434 IPR002048 GO:0005509
Gso11g1098 542 Gene3D Phosphorylase Kinase; domain 1 68 151 - -
Gso11g1098 542 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Gso11g1098 542 MobiDBLite consensus disorder prediction 1 54 - -
Gso11g1098 542 Gene3D - 333 507 - -
Gso11g1098 542 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1098 Gso-Chr11 9807238 9812079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1098 1 533 EF-hand Containing Proteins AT2G31500 66.045 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso11g1098 Pkinase 8.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1098 K13412 - gmx:100818929 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0444 12 3877660 3882211 Gso11g1098 11 9807238 9812079 GST