Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1093 ATGTATCCAAAACAGTCAGGCCAAGATGGCCCTGATTCCAGACAGGTACGCTCAAGTGATAGGATCAAGACAAGGCCAAACGTTTATGGCCGGCCATATTTGTATTACAACCAAAATCATAGGCACACCAGGAAAAGCAAGATCAAGACAAGGACAGCAGCTTCACAGATTGCTAAGATGTTGCGTCCAGGGAATCGAAAATCAAAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACAGACAGCTCTGGAGCTCAAGATGAAGACTTAATGAGACCACCTACATATTCATCATTGAGAAACCGGATGAAAAATAGTGTCAGACGGGATGGTTTGATGTCTAATAAGCGCAAAAGAGCAGCGGAGACTAAACAAACACCTCGACGTGAAGGTCTACGTCCTCGCCGTTCAAAGGGTGCTGCAATAGAACGATTAATTTTAGAATCAGATGATGAGCAAGACCTTTCAGAGGAAAAGGTTGATGAGGATGAAACAGAAAATGGAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGCTGAGGAGGAAGATGAAGATGAGGACGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTTCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCCCGGCCAAGATCTCCAAGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAACAGAGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCAAGCTATTCCATGGGGGCGAGGTGGCAACAGATCTGGTCCGCCTTGGCTATTTGGGGGCTTAGAGATGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTGTGGCTACTCTAACTTCGGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGAGAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTTAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTATTGTTATGTGGGCCCCCTGGCACAGGGAAAACGTTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCTAAAGCAGGCCAGAAGGTTAGCTTTTATATGCGCAAAGGAGCAGATGTGTTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTTTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCTACTTTGCTTGCTTTGATGGATGGCCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACTAACAGGATTGATGCTATTGATGGAGCCTTACGGCGCCCTGGTAGATTTGACCGTGAGTTTAACTTTCCTCTGCCTGGTTGTGAGGCACGTGGTGAGATATTAGACATTCACACTCGTAAGTGGAAGCATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTGAAGGCTCTTTGTACTGAAGCTGCCATCCGTGCATTCCGTCAAAAATATCCACAGGTTTATACTAGTGATGACAAATTTGTCATTGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCCATGTCTACCATTACTCCTGCTGCTCATAGGGGAGCTATTGTGTACTCTAGGCCTTTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATTTAGAGAAAGCCATGTGTAGTATATCTGATATTTTCCCTCCAGCTTCAATTACATCAGAGTTGACCAAACTTTCGATGCTCTCCTACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTGCTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCCGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCAGAGGAGGCATTGGTACATATATTTGGTGAATCTAGAAGAACAACACCATCAATTCTCTATTTACCACAATTTGATGTTTGGTGGGAGACTGCTCATGAACAGCTCCGGGCTGTTCTCCTGACTTTGCTAGAAGAATTACCATCTGACTTGCCTATCTTACTGCTTGGTACATCCTCAGTTGCACTTTCTGAAGTTGAGGAAGTGCCTACTTCCATTTTCCCTCATCGCTCAGTTTATGAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATGTTTTGATAGAAGCTGCTATGTCAATATTGTTGGAGGGAATCAACAAGAAATCTCAAGACACCGGATGTCTCCCAGAACTTCCCAAGGCACCGAAATTGGCTAGTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATTCTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTGACAGATGAAGATGCACCAAATTATCGTTCAATTATACAGAACCCAATGGACGTGGCTACCATCCTGCATCATGTTGATAATGGTGACTATATTACAAGTGCTGCATTCCTGCAGGACATCAATCTCATTGTTTCCAATGCAAAGGCTTACAATGGAGAGGACTACAATGGTGCTAGGATTGTTAGTAGAGCTTGCGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCATATTGTGAAAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGTCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTGCTGCTGGGTCAAAGTACTAGAATGAGTGCTCGACTTCGCCATGTCCAACCAGAAGTTAATATGAATCAGAGTTACGAAGTATTGAAGCGAACTAAGAAGATCGCTGAAGTGCATGCAGCAGAAGACAAGTCACAAGAAGATTCGGTACCCCCAAAGTCTTCCCAGGAGCATCAAGCCAATGACACAAATTCTGAAAGGCTGGAAAATGTGTCAATTGAAGGAGATTTGCATGGAACTTGTACAAATAACCTTGCTGATGGCAACAGTCCTGATGATGTCACAATGCTAGATGGTGAATTTTCAGGAGAAGTAGAGTCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAGTTATGAAGGGCGTGTTTGAAACCAAAAATAAAGGAGTGAATGGGGATCTTAAGTCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3591 0.4383 MYPKQSGQDGPDSRQVRSSDRIKTRPNVYGRPYLYYNQNHRHTRKSKIKTRTAASQIAKMLRPGNRKSKDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAQDEDLMRPPTYSSLRNRMKNSVRRDGLMSNKRKRAAETKQTPRREGLRPRRSKGAAIERLILESDDEQDLSEEKVDEDETENGNDADDGQNEIEGDAEEEDEDEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKARPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGQAIPWGRGGNRSGPPWLFGGLEMHGTTAFGLNLAASGWGHQGDAVATLTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARGEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVYSRPLSLVVQPCLQRHLEKAMCSISDIFPPASITSELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGESRRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALSEVEEVPTSIFPHRSVYEVNMPCAKDRTLFFNVLIEAAMSILLEGINKKSQDTGCLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVTDEDAPNYRSIIQNPMDVATILHHVDNGDYITSAAFLQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCEKIASQGGPVQLSDELGDSTFPATPVVLLGQSTRMSARLRHVQPEVNMNQSYEVLKRTKKIAEVHAAEDKSQEDSVPPKSSQEHQANDTNSERLENVSIEGDLHGTCTNNLADGNSPDDVTMLDGEFSGEVESVKQLFVKRSENYSIPQLERLYTRVMKGVFETKNKGVNGDLKSSVLKFLLNFVEDDANF* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1093 1196 MobiDBLite consensus disorder prediction 167 219 - -
Gso11g1093 1196 CDD AAA 408 547 - -
Gso11g1093 1196 PANTHER BNAC08G44480D PROTEIN 1 1191 - -
Gso11g1093 1196 SUPERFAMILY Bromodomain 890 1004 IPR036427 GO:0005515
Gso11g1093 1196 MobiDBLite consensus disorder prediction 220 250 - -
Gso11g1093 1196 Pfam ATPase family associated with various cellular activities (AAA) 412 547 IPR003959 GO:0005524|GO:0016887
Gso11g1093 1196 Gene3D - 548 633 - -
Gso11g1093 1196 MobiDBLite consensus disorder prediction 120 166 - -
Gso11g1093 1196 MobiDBLite consensus disorder prediction 1070 1098 - -
Gso11g1093 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 637 IPR027417 -
Gso11g1093 1196 Gene3D - 884 1012 IPR036427 GO:0005515
Gso11g1093 1196 CDD Bromo_AAA 892 1002 - -
Gso11g1093 1196 Gene3D - 370 640 IPR027417 -
Gso11g1093 1196 Pfam Bromodomain 905 973 IPR001487 GO:0005515
Gso11g1093 1196 PRINTS Bromodomain signature 924 940 IPR001487 GO:0005515
Gso11g1093 1196 PRINTS Bromodomain signature 940 958 IPR001487 GO:0005515
Gso11g1093 1196 PRINTS Bromodomain signature 958 977 IPR001487 GO:0005515
Gso11g1093 1196 SMART AAA_5 408 549 IPR003593 -
Gso11g1093 1196 PANTHER AAA DOMAIN-CONTAINING 1 1191 IPR045199 -
Gso11g1093 1196 MobiDBLite consensus disorder prediction 1 287 - -
Gso11g1093 1196 Pfam AAA+ lid domain 574 611 IPR041569 -
Gso11g1093 1196 ProSiteProfiles Bromodomain profile. 915 977 IPR001487 GO:0005515
Gso11g1093 1196 SMART bromo_6 892 999 IPR001487 GO:0005515
Gso11g1093 1196 ProSitePatterns AAA-protein family signature. 517 535 IPR003960 GO:0005524|GO:0016887
Gso11g1093 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 925 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1093 Gso-Chr11 9765934 9773625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1093 358 612 Calmodulin-binding Proteins AT3G56690 37.066 3.75e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1093 K22531 - gmx:100783127 2300.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1093 11 9765934 9773625 Gso11g1093 11 9765934 9773625 ECH
Gso12g0440 12 3843637 3851545 Gso11g1093 11 9765934 9773625 GST