Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1080 ATGGAGGACAGAAATAACCATGATGAATGTTGGGAAAGCAACAGTGTAGACAATGGTGCTGAATCCATGGAAGAAGTAGATGAACTAGACGTAATTATGCATGATAACATGAATGGGGGTTTTGAACCTTGCGAGCCAGCATCAGGGATGTCATTTCCTTCCAAGGAAGCTGTTAAATCATTTTATAGGCAGTATGCTTCTAGAATGGGATTTGGTTCCAAAGTAAGAAACTCAAAAAAAGGACGTGATGGAAAGTTACACTATTTTATATTAACATGTTCACGAGAGGGAACTCGTGTGCCAAACACTTTGAAGACATTGCCCACAATCAAGAATAATTGTGAAGCCAAAATTACAGTTTCCTTCAAAGATGGACTGTGGTACATAATGAAAGCAGTACTTGACCACTCCCATGAACTTAGCCCTACAAAGGCAATGATGCTCCGAGTAAACAAAAACACTAGCATGCATGTGAACAGAACAATAGAAATCAATCATGAAGCAAAGGCAGTGATGAACAAGACCATCCAATCTCTTGCTTGTGACGTGGGAGGGTACAGAAATTTATCATTTGTTGAAGGAGATGTGAAAAATCATGTTCTGAAGGAAAGACATACAATTGGTAAGGAAGGTGATGGTAAGGCTCTAAGGAGCTATTTTTTAAGGATGCAGGAGCAAAATTGTAATTTCTTCTACGATATAGACTTGGATGATTTTTTTCGTGTGAAAAATGTATTTTGGGCTGATGCAAGAAGTAGGGCAACATACGATTCATTTGGGGATGTGGTTACTTTTGACACAACATATCTAACAAAAAAGTATGACATGCCATTTGTTTCATTTGTTGGCGTTAATCATCATGGACAACATGTTTTATTGGGATGTGCTCTACTCTCTAGTGAAGACACAGAGTCATTTGTGTGGCTGTTTGAATCCTGGCTTCGTTGCATGTCAGGCAATCCTCCAAAAGGTATAGTGACTGAGCAAAGCAAAGCAATCCAAAAAGCAATTCAGCTAGTCTTTCCAACAACCCAACATAGGTGGTGCTTATGGCATGTAATGAAAAAAATCCCCGAGAAGTTGAAAACAAACACTGAATACAATAAGAATATAAAGAGTGCCATGAGAAGTGTAGTTTATGATACCTTCACAGAAGCTGAATTTGAAGATCAATGGAGTCATTTCATAAAAGGATTCAACCTACAAGACAATGAATGGTTGAGTGAGTTGTACAACGAACGAAGTAGATGGGTTCCAATTTTCTTAAAGAAGGATTTTTGGGCAGGAATGTCTACCACTCAACAAGGTGAAAACGTACATCCTTTCTTTGATGGATATATCAACTCAACAACATCTTTGCAACAGTTTGTCCAACTGTATGATATTGCTCTCTATGGCAAGGTAGAAAAAGAATTTGAAGCTGATTTACGATCATTCAGCACTACTATTCATTGTGGGTCAAATTCAATGATTGAAAAGCAATTCCAATCTGCTTATACCCATGCAAAATTTAATGAGGTGCAAGCTGAATTTAGAGCAAAAATTAATTGTTCTGTATCCCTTAGGGATGTGGAAGGTAGCATTTGTACTTATGATGTGTTGGAGGACATAATAGTTGAAGGACAACCAAAGGAAGCTATTTTTGAGGTAGTATTTCATCGTGACAATCATGATTTTAGCTGCAAATGTTTATTGTTTGAGTTTAGAGGTATTATGTGTAGACATTCGCTCATTGTATTTGCACAAGAAAGGGTGAAACAAGTGCCGTCAAAGTATATCTTGCAAAGATGGACCAAAAATATAAAACGGAGACATTCATGTACTAGGAGTAGTTATGATTTGATACAATTGAAGCCACAAATGCAAAGGTATGACAATTTATGCAAGGACTTTAATGAGATTGCAGAACTTGCTGCTGAGTTTGAGGGTGTTTCCCATTTCCTCCAAAATAGCTTGCATGATTTGAAAAGGAAGGTGCAATCCATGGCTCTATCCACTCACCGGCCTTCTTCATTCTTACATAAATAG 2028 0.3767 MEDRNNHDECWESNSVDNGAESMEEVDELDVIMHDNMNGGFEPCEPASGMSFPSKEAVKSFYRQYASRMGFGSKVRNSKKGRDGKLHYFILTCSREGTRVPNTLKTLPTIKNNCEAKITVSFKDGLWYIMKAVLDHSHELSPTKAMMLRVNKNTSMHVNRTIEINHEAKAVMNKTIQSLACDVGGYRNLSFVEGDVKNHVLKERHTIGKEGDGKALRSYFLRMQEQNCNFFYDIDLDDFFRVKNVFWADARSRATYDSFGDVVTFDTTYLTKKYDMPFVSFVGVNHHGQHVLLGCALLSSEDTESFVWLFESWLRCMSGNPPKGIVTEQSKAIQKAIQLVFPTTQHRWCLWHVMKKIPEKLKTNTEYNKNIKSAMRSVVYDTFTEAEFEDQWSHFIKGFNLQDNEWLSELYNERSRWVPIFLKKDFWAGMSTTQQGENVHPFFDGYINSTTSLQQFVQLYDIALYGKVEKEFEADLRSFSTTIHCGSNSMIEKQFQSAYTHAKFNEVQAEFRAKINCSVSLRDVEGSICTYDVLEDIIVEGQPKEAIFEVVFHRDNHDFSCKCLLFEFRGIMCRHSLIVFAQERVKQVPSKYILQRWTKNIKRRHSCTRSSYDLIQLKPQMQRYDNLCKDFNEIAELAAEFEGVSHFLQNSLHDLKRKVQSMALSTHRPSSFLHK* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1080 675 Pfam FAR1 DNA-binding domain 60 141 IPR004330 -
Gso11g1080 675 Pfam MULE transposase domain 262 356 IPR018289 -
Gso11g1080 675 ProSiteProfiles Zinc finger SWIM-type profile. 548 584 IPR007527 GO:0008270
Gso11g1080 675 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 670 IPR031052 GO:0006355
Gso11g1080 675 PANTHER OS03G0843700 PROTEIN 9 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1080 Gso-Chr11 9658148 9661506 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso11g1080 MULE 1.2e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1080 - - gmx:102667848 1394.79