Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1079 ATGGATAATAGGGACAACAAATCGCCTCCTCCTCTCCCACCTTCTTCTTCCCGTTACGTGAAATCGGAACAACAAGCTTCATTATCAGCATCGTCGTCGTTCAGCCACGACGACATAAGCGGAATGCCGGAGAATCCACCGAAGAACAGAGGGCACAGGCGCGCCCATTCGGAGATTATAACCCTACCCGACGACCTCACCTTCGACGTTGATCTCCCCGATGACAACGACTTGCTTTCCATCTACCTTCAATTCGATCAACTCGATTCCTCTCCACTTCCTCTTCCTCCTCCACCTCAACACAACAGCATTGCTAATAATAATAATAATAATAATAATAAGAATAATAATAATAATAATGAAAGGCCTACTAGGGTTCGACACCAACACAGCCTCTCCATGGATGGCTCCATCCACCCGGATATGCTGCTCTCCGCTACCGCTGCCGCTGCCGATGATGTCTCCGGTGGTGGCATCGACACCAAAAAGGCTATGTCTGCTGACAAGCTTGCTGAGCTTGCCTTAGTTGATCCCAAGCGGGCTAAAAGGATATGGGCAAATAGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCCGAGCTTGAAAGGAAAGTGCAGACATTGCAAACTGAAGCAACTTCCTTGTCTGCACAATTGACTCTCTTGCAGAGAGATACAACTGGAATGACTGCTGAGAACAGTGAGTTGAAGTTGCGGTTGCAAACCATGGAGCAACAGGTCCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAAGCACTGACTGGACAAGTTATGCCAAATGGAGGACCGGTAAATTTTGCTTCATTTGGTGGGGGGCAACAATTCTATCCCAACAATCAGGCTATGCACACTCTTTTAGCTGCACAAAAGTTTCAACAACTCCAAATTCATTCCCAAAAGCAGCATCAACTTCAGCAGCAACAGCAATTTCAGCAACAACAGCAATTTCAGCAGCTGCAACAGCTGCAACTGCAGCAGCAACAACAACTGCAACTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCAACTGCAGCAGCAGCAGCAGCAACAGGAACAGTAA 1158 0.4715 MDNRDNKSPPPLPPSSSRYVKSEQQASLSASSSFSHDDISGMPENPPKNRGHRRAHSEIITLPDDLTFDVDLPDDNDLLSIYLQFDQLDSSPLPLPPPPQHNSIANNNNNNNNKNNNNNNERPTRVRHQHSLSMDGSIHPDMLLSATAAAADDVSGGGIDTKKAMSADKLAELALVDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTTGMTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKALTGQVMPNGGPVNFASFGGGQQFYPNNQAMHTLLAAQKFQQLQIHSQKQHQLQQQQQFQQQQQFQQLQQLQLQQQQQLQLQQQQQQQQQQQQQQQQQQQQQQQLQLQQQQQQQEQ* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1079 385 Gene3D - 178 231 - -
Gso11g1079 385 SMART brlzneu 175 239 IPR004827 GO:0003700|GO:0006355
Gso11g1079 385 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 13 346 - -
Gso11g1079 385 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 177 240 IPR004827 GO:0003700|GO:0006355
Gso11g1079 385 CDD bZIP_plant_RF2 180 229 IPR044759 GO:0003700|GO:0006355
Gso11g1079 385 MobiDBLite consensus disorder prediction 17 39 - -
Gso11g1079 385 MobiDBLite consensus disorder prediction 102 120 - -
Gso11g1079 385 Coils Coil 244 264 - -
Gso11g1079 385 Pfam bZIP transcription factor 179 231 IPR004827 GO:0003700|GO:0006355
Gso11g1079 385 Coils Coil 337 384 - -
Gso11g1079 385 MobiDBLite consensus disorder prediction 1 54 - -
Gso11g1079 385 MobiDBLite consensus disorder prediction 90 126 - -
Gso11g1079 385 Coils Coil 195 229 - -
Gso11g1079 385 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 13 346 - -
Gso11g1079 385 SUPERFAMILY Leucine zipper domain 179 230 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1079 Gso-Chr11 9650998 9656264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1079 10 306 bZIP Transcription Factor Family AT1G06070 61.321 6.42e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g1079 bZIP_1 4.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1079 - - gmx:100814674 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1079 11 9650998 9656264 Gso11g1079 11 9650998 9656264 ECH
Gso12g0427 12 3727769 3732715 Gso11g1079 11 9650998 9656264 GST
Gso15g0259 15 2362207 2367593 Gso11g1079 11 9650998 9656264 PCT
Gso11g3546 11 51241167 51245667 Gso11g1079 11 9650998 9656264 PCT
Gso11g1079 11 9650998 9656264 Gso15g0259 15 2362207 2367593 PCT
Gso11g1079 11 9650998 9656264 Gso11g3546 11 51241167 51245667 PCT