Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1077 ATGCCGCTTCCGGCGAAACCGATGAGGGATTTCGACGAGTCGGCTCCTCCGTCGAACAATCTGTGGGTGGGGAATCTGGCGGCGGACGTCACCGACGCCGATCTGATGGAGCTCTTCGCCAAATACGGCGCACTCGACAGCGTGACGTCATACTCCGCTCGCAGTTACGCGTTCGTGTTCTTCAAGCGCGTCGAAGACGCCAAAGCCGCTAAGAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAATTTGCCAGACCGGCAAAGGCTTGTAAACAACTTTGGGTGGGTGGTATTAGCCAAGCTGTTACAAAGGAAGATTTGGAAGCTGAATTTCATAAATTTGGTACAATTGAGGATTTTAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTGTCAGGCTATGAAAATCATGAATGGGAAACGAATTGGTGGGGAGCATATTCGTGTTGACTTCCTTCGTTCACAATCTACAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAACTTGGGGCCTACTGATGCTTATTCTGGACAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGAAAAGGCGACAGTCAACCAAGTAATATTTTGTGGATTGGTTATCCGCCTGCTGTTCAGATTGATGAACAAATGCTTCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTCCCTTCGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGACGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAACGATCCTCGAATAACAATTATGTATTCCATCAGTGACCTAGTACCTGGCAGTGATTACCCTGGCTTTTTTCCTGGAAGTAATGGACCGAAACCTGATGTATTGCTGAATGACCATCCATTTCGACCATTACAAATGGATGCATTTGGTCATAATCGTCCAATGGGTCCAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACCAAACATACCAATGCGACCTTTTGGTCCTCACAGTGGTGTTGAATCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAATGCGCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAGCATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGTGCTAGGCTTCCTACAAGATCAACCTCGGGTGCATGGGATGTGCTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGATGAAGGCCCATTTCCTTTGAGGAATATAGATGATCGGGGGTTAGCTCTAGAGCAGACATATGGGATTGACCCAGCTATTGATGGAGGTGGTTCTGGTCCATATGTAAACATTCAAGGAAAGAGTCACCTTGGTCCAGTTAGCTCAAGGATTACAGCTGGAGTACATGGTGTCGCCCAACCTGATATTGATCATATTTGGCGTGGAGTTATTGCAAAAGGGGGAACTCCTGTTTGCCGTGCTAGATGTGTACCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACCGAGTTCCTTCGCTATCTTAGTGCGAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTGTATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAACCATCACATTTGCGTGTACCAACTACTCAGTATATGCAGCAGATTCCTCCTTCGCAGACTGAATATGGTTTGATTCCTGTAAAAGAGGAACATATTTTACCAATGGATTATAACAGACCGTTGCATGAGGATTCCAAGCTTCCTGCTAAACCAGTCTATCCACCAACAGGTGGCCCCCCTCCAGTTCATTCTGGGCCTCCAGATTATGCTCCTAATAATACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTAATTGCAACTTTAGCTTCTTTTCTTCCTACAACTACACAATCACCTGCCACTGATGGTGCCAAGTCAGCTGTAGGTTCCTCGACCATGAAGCCTCCATTTCCTCCCATGACACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATAATCAAATTGCAGATCAATCCACTCATCCTCCTCAACAGTTGAGGAGCATGTATAACATTCACAATGCTCACTATCAGCCCTATCCACCAGCATCTGCTCCTTCTGGCAATCCTTCTCAAGTGGTCTCTGGCAGTTCTCATATCCAAGATACTGCTGCCAGCATGCAGCAGCAAGGTGCTGTTTCATCAAGACACATGCCTAATTTCATGATGCCTACTCAAAGTGGACAGGTAGCTGTATCCCCCCATGCCAGTCAGAATTATCAAGTTGAGGTCTCCCCCAGCAATCAGAAAGGTTTTGGAGTGGTGCAGGGAACAGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCTGGCTTTCCAACAACCCAATAATTCTTTTGCCTTATCTAATCAAGTTAATAGTACTAATGCTTCACAGCAGCAAACTGCCATGCCATATACAGTGGACCAGGTAAACCCGGACACCCCCAATCAGCAACTTCCTATGTTTGGAGTCAGTCAAGGACAAACAGAGGTAGAGGCTGATAAGAATCAGAGATACCAGTCAACGTTACAATTTGCTGCCAATCTTCTTCTCCAAATACAACAACAACAGCAACAAGCCCCAGGAGGACATGGGCCAGGACAATGA 2997 0.4505 MPLPAKPMRDFDESAPPSNNLWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISQAVTKEDLEAEFHKFGTIEDFKFFRDRNTACVEFFNLEDACQAMKIMNGKRIGGEHIRVDFLRSQSTKRDQLLDYGQFQGKNLGPTDAYSGQKRPLHSQPPMGRKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSISDLVPGSDYPGFFPGSNGPKPDVLLNDHPFRPLQMDAFGHNRPMGPNNFPGQLPPSGIMGPNIPMRPFGPHSGVESVISGPEFNEINALHKFQDGSSKSSMGPNWKRPSPPAPGMLSSPAPGARLPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEGPFPLRNIDDRGLALEQTYGIDPAIDGGGSGPYVNIQGKSHLGPVSSRITAGVHGVAQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQPSHLRVPTTQYMQQIPPSQTEYGLIPVKEEHILPMDYNRPLHEDSKLPAKPVYPPTGGPPPVHSGPPDYAPNNTVAGSQAGVALTPELIATLASFLPTTTQSPATDGAKSAVGSSTMKPPFPPMTPNDGNQSHLWKQDNQIADQSTHPPQQLRSMYNIHNAHYQPYPPASAPSGNPSQVVSGSSHIQDTAASMQQQGAVSSRHMPNFMMPTQSGQVAVSPHASQNYQVEVSPSNQKGFGVVQGTDASVLYNSQAFQQPNNNSLAFQQPNNSFALSNQVNSTNASQQQTAMPYTVDQVNPDTPNQQLPMFGVSQGQTEVEADKNQRYQSTLQFAANLLLQIQQQQQQAPGGHGPGQ* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1077 998 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Gso11g1077 998 MobiDBLite consensus disorder prediction 805 873 - -
Gso11g1077 998 CDD RRM3_Spen 98 167 - -
Gso11g1077 998 MobiDBLite consensus disorder prediction 741 755 - -
Gso11g1077 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Gso11g1077 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Gso11g1077 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Gso11g1077 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Gso11g1077 998 Pfam SPOC domain 506 623 IPR012921 -
Gso11g1077 998 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 998 - -
Gso11g1077 998 Gene3D - 206 297 IPR012677 -
Gso11g1077 998 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 998 - -
Gso11g1077 998 CDD RRM3_Spen 21 90 - -
Gso11g1077 998 SMART rrm1_1 97 164 IPR000504 GO:0003723
Gso11g1077 998 SMART rrm1_1 20 87 IPR000504 GO:0003723
Gso11g1077 998 SMART rrm1_1 217 285 IPR000504 GO:0003723
Gso11g1077 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Gso11g1077 998 MobiDBLite consensus disorder prediction 682 718 - -
Gso11g1077 998 MobiDBLite consensus disorder prediction 181 213 - -
Gso11g1077 998 SUPERFAMILY RNA-binding domain, RBD 97 288 IPR035979 GO:0003676
Gso11g1077 998 MobiDBLite consensus disorder prediction 741 776 - -
Gso11g1077 998 MobiDBLite consensus disorder prediction 695 710 - -
Gso11g1077 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Gso11g1077 998 Gene3D - 94 203 IPR012677 -
Gso11g1077 998 MobiDBLite consensus disorder prediction 382 417 - -
Gso11g1077 998 MobiDBLite consensus disorder prediction 816 873 - -
Gso11g1077 998 CDD RRM3_Spen 218 287 - -
Gso11g1077 998 Gene3D - 5 93 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1077 Gso-Chr11 9623671 9634980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1077 20 279 Eukaryotic Initiation Factors Gene Family AT2G23350 23.404 3.36e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1077 - - gmx:100777570 1971.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1077 11 9623671 9634980 Gso11g1077 11 9623671 9634980 ECH
Gso12g0425 12 3707617 3719568 Gso11g1077 11 9623671 9634980 GST
Gso15g0258 15 2345415 2356692 Gso11g1077 11 9623671 9634980 PCT
Gso11g3547 11 51250454 51262194 Gso11g1077 11 9623671 9634980 PCT
Gso11g1077 11 9623671 9634980 Gso15g0258 15 2345415 2356692 PCT
Gso11g1077 11 9623671 9634980 Gso11g3547 11 51250454 51262194 PCT