Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1070 ATGGAAGACCATGTTTCCCCTGAGGGAAAGGAAGTTAGCTGTTGCACACCTCCTGGGGCTCAGTTGGAGGAACCAACATCGGTAGACGGTGGAATGAAAAAATCTGCTTCAGAGGACATGTTTAGCAACTTCTCAGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGCCCATCCATGACTGATCAGAGTTTGGCTAATGTGTTTTCATCGTTTTCCTTGGCGCCATATCCAGTACCTGATGTGTTGAATTTAGTGGAGCATGGAAATGGTCCATTCTTTATGACAGAAGATAGTGAAATTCACAATGATATGGAAAGTGCTCCTAGTTGTGGGGAGAGAATTATATTTCAGCAGATGGACTTTCAACTTGGGTTCTTAGATGAAGCAAATGATTCAAATAGCTTAGATTCAAAACAAAAACCTAATGGCACATCTCAGGAAGTTAATACCACAGACATGTGCAATTACATAATCTCAAGTTCACCAGGTAGGTCACTTGATGATAGAATGCTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGGGGGAATGTTGGCACAAGTTTGGGTGCCAATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGTGAAGTGTCGAGGGCATTTACATTTTCTGCAGAAGGAAAGACGCAATCATGTCCGGGGCTTCCAGCTCGCGTGTTTATATCGCACGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTACTTAAGGTTGGAGCACGCAAGGAATCACGAGATTCGTGGATCTATTGCTCTTCCTATATCTGATGTGCACTCTCAAGTGCCATGTGCTGTATTGGAACTAGTTACTACAAAGGAAAAGCCTAACTTTGACAGAGAATTAGAAATTGTTTCTCAAGCACTCCAGCTTGTAAATTTAAGGACTACTATGCCTCCACGACTTCATCCTCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTGACTGAGATAATTGATGTGTTACGAGCCGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAAGAAACGAAACTGACAGAATACGAATCAAAGAGGGTCATACAAGTCCTAATGAAAAATGTGTACTATGTATTGAAGAATCAGCTTGCTATGTAAATGATGGAGCTGTAGAAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATTGCTGGGAAAGCTCTTCAATCAAATCATCCGTTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATATCCCCTTGTTCATCACGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACCTACACCAATGATGATGATTACATATTAGAATTCTTTCTGCCTGTGAATATGACAGGGAGTTCAGAACAGGAACTTTTATTGGACAATCTCTCCAGTACCATGCGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATAGAAGGTTCCCAAGGTGGGTTTCCAAAGGAAAAAGTCTCAGGTTTTTTTCCCATGTCCAGGAGAAACTCTCAGATAGCATTCATAAGCGATGACCATGATTCTGTCCTGAAGATGTCCTTGAAGGCATCTAACATGAGAAATAATGGAATTGAAGCCGTTCATAGTCAGACAATGAATGGATCAAGAAAGCAGGTAGAGAAAAAGAGAAGCACAGTGGAGAACAATGTTAGTTTGAGTGTTCTTCAACAATACTTTTCCGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGACAACATGGAATTTCAAGATGGCCATCCCGAAAGATAAATAAAGTGAATCGTTCGTTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGCTAAAGTTTGATCCTTATACCGGGGGGTTTATAGCCGGAGGATCAATCATGCAGGAAACGGAAGCACATAAATATCTTGTGTTTCCTGAGAAAAGTTCTGTGAAAGATCCTAAGCCTGCAACACAAAAAAAAGTCTCAGTAGCTCCAGCACCTGCCAGCACTATTGAGAATTCAACAATTAAGTTGAATGATGATGAAGGTGTTTGTCTGGTGGGAAACAAGCTTGTGCACTCAAGAAGTATTCCTAACTCCAACAGCGGTGAGGGAGAATTGAAGAAAGACAATGTTTCTTCTGATGATTCAAAATCAATGACCATGAATGATGGATCATGCCATAAAGCTTGCCATTGGAAAAAGACTAAGGATTGTCCTGAACAAACTTGTTCAATGTCCTTGGTAACTGATGAGGTTGAAGTTGGTGTAGATAGGGTAGAAGGAGCTGATGAACATAACCATCCTACTTCTTCAAGCACTACAAACTCATCCAATGGCTCTGGCTCAATGATGCATGGAAGCTCATCATGCTCTCATGAGAACCAAAAGTATTCAAAAGTTAAATCAAATTGTGTTGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTACAGGGGTGATACTATTCGTTTCAAGTTTGATCCATCTTCAGGTTGTTTCCAGCTATATAAAGAAGTTGCAACAAGGTTCAAATTGCAAAATGGATCATTCCAGCTCAAATATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAATGTACAGAAATTTTGGATGACATTGGAACACGTTGTGTGAAGTTTCTTGTCCGTGACGTGCCTTGTGTTTTAAGTAGCCATGGCAGCAACAGTTGCTTCTTGTCAGATAGCTCTTAG 2898 0.4092 MEDHVSPEGKEVSCCTPPGAQLEEPTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSPSMTDQSLANVFSSFSLAPYPVPDVLNLVEHGNGPFFMTEDSEIHNDMESAPSCGERIIFQQMDFQLGFLDEANDSNSLDSKQKPNGTSQEVNTTDMCNYIISSSPGRSLDDRMLRALSFFMESADGGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKTQSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLEHARNHEIRGSIALPISDVHSQVPCAVLELVTTKEKPNFDRELEIVSQALQLVNLRTTMPPRLHPQCLSSNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIRNETDRIRIKEGHTSPNEKCVLCIEESACYVNDGAVEGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQELLLDNLSSTMRRICKSLRTVSDAELTGIEGSQGGFPKEKVSGFFPMSRRNSQIAFISDDHDSVLKMSLKASNMRNNGIEAVHSQTMNGSRKQVEKKRSTVENNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMQETEAHKYLVFPEKSSVKDPKPATQKKVSVAPAPASTIENSTIKLNDDEGVCLVGNKLVHSRSIPNSNSGEGELKKDNVSSDDSKSMTMNDGSCHKACHWKKTKDCPEQTCSMSLVTDEVEVGVDRVEGADEHNHPTSSSTTNSSNGSGSMMHGSSSCSHENQKYSKVKSNCVDSGSKMIVKASYRGDTIRFKFDPSSGCFQLYKEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECTEILDDIGTRCVKFLVRDVPCVLSSHGSNSCFLSDSS* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1070 965 PANTHER PROTEIN NLP8 5 962 IPR045012 GO:0003700
Gso11g1070 965 CDD PB1_NLP 866 946 IPR034891 -
Gso11g1070 965 Pfam RWP-RK domain 602 650 IPR003035 -
Gso11g1070 965 ProSiteProfiles PB1 domain profile. 865 947 IPR000270 GO:0005515
Gso11g1070 965 Pfam PB1 domain 868 946 IPR000270 GO:0005515
Gso11g1070 965 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 962 - -
Gso11g1070 965 MobiDBLite consensus disorder prediction 815 848 - -
Gso11g1070 965 MobiDBLite consensus disorder prediction 821 848 - -
Gso11g1070 965 MobiDBLite consensus disorder prediction 748 775 - -
Gso11g1070 965 SUPERFAMILY CAD & PB1 domains 862 949 - -
Gso11g1070 965 Gene3D - 862 944 - -
Gso11g1070 965 ProSiteProfiles RWP-RK domain profile. 582 670 IPR003035 -
Gso11g1070 965 MobiDBLite consensus disorder prediction 1 34 - -
Gso11g1070 965 SMART PB1_new 865 947 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1070 Gso-Chr11 9548784 9554732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1070 18 961 NLP Transcription Factor Family AT2G43500 50.469 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso11g1070 PB1 1.7e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1070 - - gmx:100812527 1912.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1070 11 9548784 9554732 Gso11g1070 11 9548784 9554732 ECH
Gso12g0416 12 3630531 3636777 Gso11g1070 11 9548784 9554732 GST
Gso15g0247 15 2236895 2245159 Gso11g1070 11 9548784 9554732 PCT
Gso11g3557 11 51345905 51353230 Gso11g1070 11 9548784 9554732 PCT
Gso11g1070 11 9548784 9554732 Gso15g0247 15 2236895 2245159 PCT
Gso11g1070 11 9548784 9554732 Gso11g3557 11 51345905 51353230 PCT