Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1067 ATGACTACTGGTGCTGAGAGATACCCTGATTTCTTCAAAGTCTTCCTTCCCGAGCGGCACTCTGAAAGAATGCTTATACCAAATGCTTTTGTGAGGTTGCCACAGTCACAAGGAAGGATCCCTGAGGATGTAATCCTCAGAAATATAAGTGGGAGAGTGTGGCAGGTCAAAACACGCTATATCGGAGAGAAACTATATTTTGATGATGGATGGAATGCTTTCCACGAAGAAAACTGCTTAGGACATGCAGACTTTCTTGTCTTCAAGCATGACCGAAGTAATGAGTTCAAGGTACTCATCCTTGAATCATCAACACAGTGTCAAAAGCCTGTGGTAAAGATGGAGGAGGAGAATGAACAAGAGCAAGCAGCAGCGCAACATGCTGAGGACTGTGATATAGAGGAGGAGGAAGACAGTTCTTCCAAGGATGAGAACTATGATGACGACAGCGATGACAGTGATTTTGATGATGATGAAGAGAGTAAAGAAGAATTCGGTGCTGGATTCAAGAGTCAAAGTCATCATAGAAGAGCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCGATGCTGAAGATCCTCTTCCAGAATATGTATTTGATCCAGAAATGTGTATTCAGCGTGAGAATCATTTTTTTAAAGCAAAGCTCTACAGAACTAGACCCAACGAATTGCATATTCCAGGAAATTCCATTCAAGAATTTTCCCTTACTTTTCCTGAAAATTATGTTACCCTTATATGTTGTCAACCCTGCCAGCGCAAGGACATTCCAATGAATGAATTGGGAGATTATCATCATAACTTGACACAACAGACACACATCCGCAAAAAGTATCAGGAAGTGACAGGAAGAGTGTGTAGGTGGCAAGATCGAATATGCATCAAGGGTTGGGCAAGCTTTTCTAAAAGGAATAAGATTGAAAGAAATGATACATGCTTCTGTGAAGTAATATCAGGGGAAGACCAAGTAGTAAGAACACTTGAGGTGCATGTTGCCAGGAGGAGATGA 1011 0.4184 MTTGAERYPDFFKVFLPERHSERMLIPNAFVRLPQSQGRIPEDVILRNISGRVWQVKTRYIGEKLYFDDGWNAFHEENCLGHADFLVFKHDRSNEFKVLILESSTQCQKPVVKMEEENEQEQAAAQHAEDCDIEEEEDSSSKDENYDDDSDDSDFDDDEESKEEFGAGFKSQSHHRRACKRETASSSNPDAEDPLPEYVFDPEMCIQRENHFFKAKLYRTRPNELHIPGNSIQEFSLTFPENYVTLICCQPCQRKDIPMNELGDYHHNLTQQTHIRKKYQEVTGRVCRWQDRICIKGWASFSKRNKIERNDTCFCEVISGEDQVVRTLEVHVARRR* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1067 336 Gene3D - 3 107 IPR015300 -
Gso11g1067 336 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Gso11g1067 336 SUPERFAMILY DNA-binding pseudobarrel domain 257 331 IPR015300 -
Gso11g1067 336 CDD B3_DNA 9 101 IPR003340 GO:0003677
Gso11g1067 336 MobiDBLite consensus disorder prediction 130 162 - -
Gso11g1067 336 Gene3D - 199 336 IPR015300 -
Gso11g1067 336 Coils Coil 111 131 - -
Gso11g1067 336 Pfam B3 DNA binding domain 11 101 IPR003340 GO:0003677
Gso11g1067 336 MobiDBLite consensus disorder prediction 111 196 - -
Gso11g1067 336 MobiDBLite consensus disorder prediction 112 129 - -
Gso11g1067 336 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Gso11g1067 336 SMART B3_2 11 104 IPR003340 GO:0003677
Gso11g1067 336 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 7 331 - -
Gso11g1067 336 PANTHER B3 DOMAIN-CONTAINING 7 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1067 Gso-Chr11 9529766 9532563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1067 1 334 B3 DNA Binding Superfamily AT3G06160 24.425 1.30e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso11g1067 B3 5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1067 - - gmx:100811445 628.246