Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1060 ATGTTCCATTGCTCCTCTATCACTATCACAATGGGAGACTTTTCATTACACGAAAACAACATGGATTATCATCAGGACAACCCTGCAGTCTTCTTCACTATCATCAACAACACCAAGCTACTGAAAGTCCCAGAGGAGTTTCTGAAACATTTGAATGAAGACTTGTCTAGTAATGCAGTTCTTATAGGCCCTTCTGGTGATAAGTGGCAAGTAACTATTTTGAAGAAAGGAAATAACGTCTATATGAACAATGGTTGGTCACAATTTCTGAAAGACAACTCAGTGGTGCTTGATGAGTTCTTGCTTTTCACATATCATGGAGGAAACTGCTTCTATGTTCAAATTTTTTGTGGGAATGGATTGGAGAGGCTATGCCTCAAAGAAACAAGACAAGAACAAGCTGTCACCCCTCAATTTTTAGATCTGACTTTTAGCAACAAAGCCTTAATTTCTGATGGATGTGAGATAAAGAAAACAAGTCAAGAACAAGCTTCCACCCCAAGTTTGGTAAGGATAACAAACAAGAGTAAACAAAGAAAAACTTCTGCTGGTTCATTTCTTCACCATGAATCGAAGTCGTCGTGCCAAGAAGATCTGCCTTTCAGCAACAAAGCCTTACTTTCTAAGGACTTCCCAAAGCCTCTGAGTTCAATCAAATTTGAAACTTCAGAAGCATGCAAATTGGCCGAGTCCTTTACCTCTCGCAATCCTCATTGGAAGCACCTCATGACAAAATGCAATGTGGAAGATCATTGCACATTGCACATTGCTACTCAGTTTGCATGTAAGTACATTCCTGAAGTAGTGAAACAGATCATTCTATGGAATTCGGAAGGAAAATTTTGGGAAGTGGAAGTGACTTGTTTAAGATATCAAAATAAAAGGTATACTCGGTTTACGACAGGATGGGGAAAATTCGTTCGTGATAACAAGCTCATGAAAGGTGACACTTGCATTTTTGAACTTGAAGACGAAAATCATATGAGCGTTCACATATTCAGAACCAGTGTCTGA 1014 0.3895 MFHCSSITITMGDFSLHENNMDYHQDNPAVFFTIINNTKLLKVPEEFLKHLNEDLSSNAVLIGPSGDKWQVTILKKGNNVYMNNGWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIFCGNGLERLCLKETRQEQAVTPQFLDLTFSNKALISDGCEIKKTSQEQASTPSLVRITNKSKQRKTSAGSFLHHESKSSCQEDLPFSNKALLSKDFPKPLSSIKFETSEACKLAESFTSRNPHWKHLMTKCNVEDHCTLHIATQFACKYIPEVVKQIILWNSEGKFWEVEVTCLRYQNKRYTRFTTGWGKFVRDNKLMKGDTCIFELEDENHMSVHIFRTSV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1060 337 CDD B3_DNA 243 334 IPR003340 GO:0003677
Gso11g1060 337 CDD B3_DNA 41 117 IPR003340 GO:0003677
Gso11g1060 337 Pfam B3 DNA binding domain 242 335 IPR003340 GO:0003677
Gso11g1060 337 Pfam B3 DNA binding domain 37 116 IPR003340 GO:0003677
Gso11g1060 337 SMART B3_2 31 119 IPR003340 GO:0003677
Gso11g1060 337 SMART B3_2 239 336 IPR003340 GO:0003677
Gso11g1060 337 Gene3D - 23 119 IPR015300 -
Gso11g1060 337 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Gso11g1060 337 PANTHER B3 DOMAIN-CONTAINING 23 335 - -
Gso11g1060 337 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 23 335 - -
Gso11g1060 337 SUPERFAMILY DNA-binding pseudobarrel domain 26 119 IPR015300 -
Gso11g1060 337 ProSiteProfiles B3 DNA-binding domain profile. 239 336 IPR003340 GO:0003677
Gso11g1060 337 SUPERFAMILY DNA-binding pseudobarrel domain 234 336 IPR015300 -
Gso11g1060 337 Gene3D - 218 336 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1060 Gso-Chr11 9467727 9470060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1060 30 322 B3 DNA Binding Superfamily AT3G18990 24.611 8.34e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso11g1060 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1060 - - gmx:100809844 681.789