Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1059 ATGAGAGACTTTTCATTTCATTCCAATGATTTATTAATCTTGCAAGGAAACAACAGAGAGAGGTGGAAGATGGATTATCATCAGGACAACCCTGCAGTTTTCTTCACTACCATCAAGAACACCAAGCAACTGAAAGTCCCAGAGGAGTTTCTGAAGCATTTGAATAAAGACTTGTGGAGTAATTCAGTTCTTATAGGCCCTTCTGGTGATAAGTGGCAAGTAACTATTTTGAAGAAAGGAAATAACGTGTATATGGACAATGGTTGGTCACAATTTCTGAAAGACAATTCAGTGGTGCTTGATGAGTTCTTGCTTTTTACATATCATGGAGGAAACTGCTTCTATGTTCAAATTTTTGGTGGGAATGGATTGGAGAGGCTATGCCGCAAAGAAGCAAGAGAAGAACAAGCTGCTACCCCTCAATTTTTTGATCTGCCTTTCAGCAACAAAGCCTCAATTTCTGATGGATGTGAGATAAAGAAAACAAGACAAGAACAAGCTTCTGCCCCAAGTTTGGCGAGGACAAACAAGAGCAAGCAAAGAAAAACTTTTGTCGGTTCATCACACCTCCATGAATCGAACTCTTACAAAAAAGGACAAGAACGAGTTGCCACCCTAAGTTGGGCGAGGACAAATAATTATAACAGTACGCAAAGAAAAACTTCAGCCGGTTCATCACACCTGCATGAATCGAATTCTTCCAAAGAAGATCTTCCTTTCAGCAACAAAGCCTCACTTTCTAAGGACTTCCCAAAGCCTCAGAGTTCAATTAATATTGAATGTTCAGAAGCATGTAAATTGGCCGAGTCTTTTACCTCTCGGAATCCTCATTGGAAGCACCTTTTGACAAAATGCAATTTGGAACGGTGCATCTTGCTTATTGCTGCTGAGTTTGCCAGAAAGTACATTCCTGAAGCACTGGAACAGATCTATCTTTGGAATTCGGAAGGAAAATCTTGGGAAGTGCGAGTGCATTATTTTAGAAATCGAAATACATGGTATGCTGCGTTTAAGAGAGGATGGGAAAGATTCGTTCGTGATAACAAGCTCATGAAAGGTGACACTTGCATTTTTGAAGTTGAAGAAGAACAAGGCCATTGGAGTGTTCACATATTCAGAACCGGATGTGCACCACATTAG 1140 0.4026 MRDFSFHSNDLLILQGNNRERWKMDYHQDNPAVFFTTIKNTKQLKVPEEFLKHLNKDLWSNSVLIGPSGDKWQVTILKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIFGGNGLERLCRKEAREEQAATPQFFDLPFSNKASISDGCEIKKTRQEQASAPSLARTNKSKQRKTFVGSSHLHESNSYKKGQERVATLSWARTNNYNSTQRKTSAGSSHLHESNSSKEDLPFSNKASLSKDFPKPQSSINIECSEACKLAESFTSRNPHWKHLLTKCNLERCILLIAAEFARKYIPEALEQIYLWNSEGKSWEVRVHYFRNRNTWYAAFKRGWERFVRDNKLMKGDTCIFEVEEEQGHWSVHIFRTGCAPH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1059 379 MobiDBLite consensus disorder prediction 237 253 - -
Gso11g1059 379 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 26 378 - -
Gso11g1059 379 CDD B3_DNA 34 119 IPR003340 GO:0003677
Gso11g1059 379 CDD B3_DNA 282 373 IPR003340 GO:0003677
Gso11g1059 379 SUPERFAMILY DNA-binding pseudobarrel domain 29 122 IPR015300 -
Gso11g1059 379 Gene3D - 258 375 IPR015300 -
Gso11g1059 379 MobiDBLite consensus disorder prediction 215 229 - -
Gso11g1059 379 MobiDBLite consensus disorder prediction 164 198 - -
Gso11g1059 379 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Gso11g1059 379 PANTHER B3 DOMAIN-CONTAINING 26 378 - -
Gso11g1059 379 Gene3D - 32 123 IPR015300 -
Gso11g1059 379 MobiDBLite consensus disorder prediction 215 253 - -
Gso11g1059 379 MobiDBLite consensus disorder prediction 162 198 - -
Gso11g1059 379 Pfam B3 DNA binding domain 40 120 IPR003340 GO:0003677
Gso11g1059 379 Pfam B3 DNA binding domain 280 374 IPR003340 GO:0003677
Gso11g1059 379 ProSiteProfiles B3 DNA-binding domain profile. 277 375 IPR003340 GO:0003677
Gso11g1059 379 SUPERFAMILY DNA-binding pseudobarrel domain 271 375 IPR015300 -
Gso11g1059 379 SMART B3_2 277 375 IPR003340 GO:0003677
Gso11g1059 379 SMART B3_2 34 122 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1059 Gso-Chr11 9459325 9462543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1059 33 360 B3 DNA Binding Superfamily AT3G18990 23.952 4.45e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso11g1059 B3 9.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1059 - - gmx:100815555 712.22