Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1058 ATGGAGGTGCCGTGGCTCTCTGTGTTTTTTCTACAATTGAGGCTTCCGGATAATTTTATGAGGAAATATGGGGGTGAACTCTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCATGTAGGATTGAAAAAAGCAGACAACAAGTATTGTTTCCTTGATGGTTGGAAAGAGTTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTATTCAGATACGAAGGAAAGTCATCTTTCAATGTCCATATTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGTCACACGAAGCAGTAATGAAGGGCTTCACTTCACAAATTGTCTTAAATTTTTTGAAGAAATGGAAGGTGAAGATTCCATTGAAATCTCGGATTCATCACCCTCCCACCTTTCACCCAGTTCATTGCAAAATCAAGCTCTTGCTGGATCAGTAGATAAAATGATGCCCGGAAAGAGTTATAATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAAGGTGGTAATGCCCATTCTTCAAGAAGTGCCAATTCACTAGATAATCGATTGACCAGAGACATAGGACTTCAGTTTAATGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCCATCGAGGAAAGGATGAAAAAAACTACAAGAAAGAAGCGAAAATCAGATGGCCAGGAACCCTCTGCTGGGCACGAAGAGGAGGTAGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCTGAAGAAAGAGAGAGGGTCATCAACGAAGCAAAAGCATTTGAACCATCTAATCCTTTCTGTCGAGTTGTCCTGCGGCCCTCATATTTATATAGGGGATGCATAATGTATCTGCCATCATGCTTTGCAGAGAAGCATTTGAATGGAGTTTCAGGGTTTATTAAACTTCAGATCTCTAATGGTAGACAGTGGCCGGTTCGCTGCCTTTATAAAGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCATGTTACCGAGGATGTGGGACTGTTGAGCCCTCCTTTGCAGCATAACCAAAACATGACCTCAGCTAAACTGTTAAGCACTCCCTTGCAGCAACACCTCACTTCAACTAAAATGGTTAGAAATTAG 1272 0.4088 MEVPWLSVFFLQLRLPDNFMRKYGGELSPIVTLSVPDGSVWHVGLKKADNKYCFLDGWKEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATSEINYQSVTRSSNEGLHFTNCLKFFEEMEGEDSIEISDSSPSHLSPSSLQNQALAGSVDKMMPGKSYNTPPALQNLFNGSKLNSINWGEGGNAHSSRSANSLDNRLTRDIGLQFNAVEFKRSTEELKLRASIEERMKKTTRKKRKSDGQEPSAGHEEEVEMRFRFYESASARKRTVTAEERERVINEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFHVTEDVGLLSPPLQHNQNMTSAKLLSTPLQQHLTSTKMVRN* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1058 423 SUPERFAMILY DNA-binding pseudobarrel domain 283 383 IPR015300 -
Gso11g1058 423 Gene3D - 8 91 IPR015300 -
Gso11g1058 423 ProSiteProfiles B3 DNA-binding domain profile. 290 385 IPR003340 GO:0003677
Gso11g1058 423 SUPERFAMILY DNA-binding pseudobarrel domain 12 89 IPR015300 -
Gso11g1058 423 MobiDBLite consensus disorder prediction 229 249 - -
Gso11g1058 423 SMART B3_2 290 385 IPR003340 GO:0003677
Gso11g1058 423 SMART B3_2 6 91 IPR003340 GO:0003677
Gso11g1058 423 MobiDBLite consensus disorder prediction 235 249 - -
Gso11g1058 423 CDD B3_DNA 288 382 IPR003340 GO:0003677
Gso11g1058 423 PANTHER B3 DOMAIN-CONTAINING 12 413 - -
Gso11g1058 423 Gene3D - 267 387 IPR015300 -
Gso11g1058 423 ProSiteProfiles B3 DNA-binding domain profile. 1 91 IPR003340 GO:0003677
Gso11g1058 423 CDD B3_DNA 12 89 IPR003340 GO:0003677
Gso11g1058 423 Pfam B3 DNA binding domain 293 382 IPR003340 GO:0003677
Gso11g1058 423 Pfam B3 DNA binding domain 12 88 IPR003340 GO:0003677
Gso11g1058 423 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 12 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1058 Gso-Chr11 9452779 9456566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1058 12 389 B3 DNA Binding Superfamily AT3G18990 51.175 1.01e-119 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso11g1058 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1058 - - gmx:100815020 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0405 12 3545849 3549515 Gso11g1058 11 9452779 9456566 GST